Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq33013 361 7e-95 seq101721 116 5e-21 >seq33013 Length=879 Score = 361 bits (400), Expect = 7e-95 Identities = 493/681 (72%), Gaps = 24/681 (4%) Strand=Plus/Minus Query 184604 GGAGGTAACTTTGCTCAGAGTTCAATTACAATCAATGGATGGTTGAGAGACTTCTTATGG 184663 || ||||| |||||||| ||| ||||||| || ||||||||||| ||||| || |||||| Sbjct 677 GGTGGTAATTTTGCTCAAAGTGCAATTACTATTAATGGATGGTTAAGAGATTTTTTATGG 618 Query 184664 TCACAGTCAAGTCAAGTTCT-CAATAGTTATGGACAAGAC--ATCAGCATGTATGGTTTG 184720 |||| || ||||| | |||| | ||||| ||| || | ||||||| Sbjct 617 GCACAAGCATCACAAGTAATTCAATCAT-ATGGATCTTCTTTATCCGCTT--ATGGTTTA 561 Query 184721 CTATTTCTTGGAGCACATTTTGTATGGGCATTCAGTTTGATGTTCCTATGGAGTGGTAGA 184780 | || ||||| |||||||| | |||||||| ||||| |||||| ||| |||||| | Sbjct 560 ATCTTCCTTGGTGCACATTTCATTTGGGCATTTAGTTTAATGTTCTTATTTAGTGGTCGT 501 Query 184781 GGATACTGGCAAGAGTTGATAGAGTCTATTGCTTGGGCACATAACAAATTAAAACTTGCA 184840 || || |||||||| | || || || |||| |||||| ||||||||| | ||| ||||| Sbjct 500 GGCTATTGGCAAGAACTTATTGAATCAATTGTTTGGGCTCATAACAAAATTAAAGTTGCA 441 Query 184841 CCTACCATTCAACCAAGAGCAATGTCAATTACACAAGGACGTGCTGTTGGAGTTGCACAC 184900 || | ||||| || ||||| | ||||| ||||| || ||||| ||| | ||||| Sbjct 440 CCAGCAATTCAGCCTCGAGCATTAAGTATTACTCAAGGTCGAGCTGTAGGATTAGCACAT 381 Query 184901 TTCTTACTTGGAGGTATTGCCACAACATGGGCATTCTTCTTTGCTCACCTTATCCCCTTA 184960 | || | || ||||||| ||||||||| | |||||||| || |||| | || Sbjct 380 TATCTATTAGGTGGTATTGGGACAACATGGTCTTTCTTCTTAGCAAGAATTATTTCTGTA 321 Query 184961 AGTTAAA--TCATGGC------TACTAA----AACAAAATTTCCAAAATTTAATCAAGAT 185008 | |||| | ||| || | | ||| |||||||||||||||| |||| | Sbjct 320 GGATAAAATTAATGAGGTAAAATATTTATGGTAACTAAATTTCCAAAATTTAGCCAAGCT 261 Query 185009 TTGGCAAGTGATCCTACAACTAGGAGATTGTGGTATGGATTAGCAACTGCACATGACTTT 185068 || ||| ||||| |||||||| ||| | |||| |||| | ||||| || ||||| ||| Sbjct 260 TTAGCACAAGATCCGACAACTAGAAGAATTTGGTTTGGAATTGCAACAGCGCATGATTTT 201 Query 185069 GAGAGTCATGACAATATGACAGAAGAGAAGTTATATCAAAAATTATTTGCTACACACTTT 185128 || | ||||| ||||||||||| || |||||||||||| | |||||| | || || Sbjct 200 GAAACACATGATGGGATGACAGAAGAAAATTTATATCAAAAAATCTTTGCTTCGCATTTC 141 Query 185129 GGTCATCTTGCAATTATCTTTCTATGGGTTGCAGGTAATTTAATTCATATAGCATGGCAA 185188 |||||| | |||||||| ||||| ||| | ||||||||| | ||| | || |||||| Sbjct 140 GGTCATTTAGCAATTATTTTTCTTTGGACATCTGGTAATTTATTCCATGTTGCTTGGCAA 81 Query 185189 GGTAACTTTGAACA---GTTTGTAGCAGACCCACAACATGTGATACCTATAGCACATAGA 185245 |||||||||||||| || | | | |||| | | || | ||| || || || | | Sbjct 80 GGTAACTTTGAACAATGGTCTTT---AAACCCGTTAAAAGTAAAACCAATTGCCCACACA 24 Query 185246 ATATGGGATCCTCATTTTGGT 185266 || |||||||| ||||||||| Sbjct 23 ATTTGGGATCCACATTTTGGT 3 >seq101721 Length=375 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696 ||| || || |||| ||||||||||||||||| || | |||||| | | | | || | Sbjct 196 ACCCGTAACTATTCAATATCCTTATGAAAAATTGATCACATCAGAGCGTTTTCGCGGTCG 137 Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTAT 188756 || |||| ||| ||||||||||| |||||||||||||||||||| | || || ||||| Sbjct 136 AATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGCCCTAT 77 Query 188757 TAATTTACCTGTAGTTGATTGG 188778 || |||| || ||||||||| Sbjct 76 AGATCTACCCGTTGTTGATTGG 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630357625465920