Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq43609 165 7e-36
seq23601 93.3 4e-14
>seq43609
Length=3422226
Score = 165 bits (182), Expect = 7e-36
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||||||||| || || || ||||| |||||||||| ||||| || | |||
Sbjct 1890911 GATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 1890970
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
| ||||||||||||||||| || || |||||||||||||||| |||| ||||| |||
Sbjct 1890971 AGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTC 1891030
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||||| ||||||||||||||||| || ||
Sbjct 1891031 AACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCA 1891071
Score = 165 bits (182), Expect = 7e-36
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || ||||||||||||||||| ||||| || || |||||||| ||||| |||| |||
Sbjct 1891071 TGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 1891012
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||||||||||| || || ||||||||||||||||| | ||| | || ||||| |||
Sbjct 1891011 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 1890952
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| ||||| || || || ||||||||||| |||||
Sbjct 1890951 CAGAGGGCATGGCATGGAGGCAGTGCCATCAGAGGAAGATC 1890911
Score = 102 bits (112), Expect = 7e-17
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| || | || ||||| || ||| ||| ||||| |||||||| || | || || |
Sbjct 1886763 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 1886822
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412
|||||||| |||||| | ||||||| | | | || || || |||||||| || || |
Sbjct 1886823 GAGACTTTTTGGACAGCCTGGGGTTCTCCGCCAGAGAAGAAGGGGACTTGGGTCCAGTTT 1886882
Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
| || ||||||||||| || |||||||| || ||
Sbjct 1886883 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 1886916
Score = 102 bits (112), Expect = 7e-17
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || ||||||||||| || || || || |||||||| || || ||
Sbjct 1886916 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCT 1886857
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | | ||||||| | |||||| ||||||||| || || | || |||||||| |||
Sbjct 1886856 CTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 1886797
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
|| ||| ||| || ||||| || | || ||||
Sbjct 1886796 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 1886763
>seq23601
Length=1137639
Score = 93.3 bits (102), Expect = 4e-14
Identities = 173/254 (68%), Gaps = 10/254 (4%)
Strand=Plus/Plus
Query 34599 CCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGG 34658
||||| |||| |||| ||| | |||||| ||||||||||||||||| | ||| | || |
Sbjct 136762 CCCTCCGCCAGTTCTTCGTGGTGAATGGTGAGCTGTCCTGCCAGCTGCAACAAAGGTCAG 136821
Query 34659 GAGACATGGGGTTAGGGGTGC-CGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATG 34717
| | | |||||| | |||||||| || || ||||| |||||||| || ||
Sbjct 136822 GGGCC---------TGGGTGCACCTTCAACATCGCCAGCTACGCCCTGCTCACTTATGTG 136872
Query 34718 ATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777
||||| || || || || || || | || ||||| ||||| ||||| ||
Sbjct 136873 ATCGCGCACATCACGGACCCAAAGCCCGGTGACTTTGTACATACTTTGGGAAATGCGTAT 136932
Query 34778 ATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTC 34837
| ||||| | ||||| | | || || ||||| || |||| || |||| |||
Sbjct 136933 GTTTACCTAAGTCACATTGCGAAACTGAAAATTCAGCTTCAGAGAGAACCAAGACCTTTC 136992
Query 34838 CCCCAGCTCAAAAT 34851
|| |||||| |||
Sbjct 136993 CCAAAGCTCAGAAT 137006
Score = 93.3 bits (102), Expect = 4e-14
Identities = 173/254 (68%), Gaps = 10/254 (4%)
Strand=Plus/Minus
Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553
||| |||||| ||||| |||| || |||| || ||||| || || | | |||
Sbjct 137006 ATTCTGAGCTTTGGGAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATG 136947
Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613
|| | ||||| | || ||||| ||||| ||||| || | || || || ||
Sbjct 136946 TGACTTAGGTAAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCC 136887
Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG-GCACCCC 6672
|| || ||||||| || |||||||| ||||| || || |||||||| | ||||||
Sbjct 136886 GTGATGTGCGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTGCACCCA 136827
Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732
| | || || | ||| | ||||||||||||||||| |||||| | ||| |
Sbjct 136826 ---------GGCCCCTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCATTCACCACGAA 136776
Query 6733 GAATTGGCAGAGGG 6746
||| |||| |||||
Sbjct 136775 GAACTGGCGGAGGG 136762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447503088320640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |