Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq43609 165 7e-36 seq23601 93.3 4e-14 >seq43609 Length=3422226 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || || ||||| |||||||||| ||||| || | ||| Sbjct 1890911 GATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 1890970 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 | ||||||||||||||||| || || |||||||||||||||| |||| ||||| ||| Sbjct 1890971 AGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTC 1891030 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| ||||||||||||||||| || || Sbjct 1891031 AACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCA 1891071 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||||||||||||| ||||| || || |||||||| ||||| |||| ||| Sbjct 1891071 TGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 1891012 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||||| || || ||||||||||||||||| | ||| | || ||||| ||| Sbjct 1891011 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 1890952 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || ||||||||||| ||||| Sbjct 1890951 CAGAGGGCATGGCATGGAGGCAGTGCCATCAGAGGAAGATC 1890911 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || ||||| || ||| ||| ||||| |||||||| || | || || | Sbjct 1886763 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 1886822 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||||||| | | | || || || |||||||| || || | Sbjct 1886823 GAGACTTTTTGGACAGCCTGGGGTTCTCCGCCAGAGAAGAAGGGGACTTGGGTCCAGTTT 1886882 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 1886883 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 1886916 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || || |||||||| || || || Sbjct 1886916 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCT 1886857 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||||||| | |||||| ||||||||| || || | || |||||||| ||| Sbjct 1886856 CTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 1886797 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || ||||| || | || |||| Sbjct 1886796 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 1886763 >seq23601 Length=1137639 Score = 93.3 bits (102), Expect = 4e-14 Identities = 173/254 (68%), Gaps = 10/254 (4%) Strand=Plus/Plus Query 34599 CCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGG 34658 ||||| |||| |||| ||| | |||||| ||||||||||||||||| | ||| | || | Sbjct 136762 CCCTCCGCCAGTTCTTCGTGGTGAATGGTGAGCTGTCCTGCCAGCTGCAACAAAGGTCAG 136821 Query 34659 GAGACATGGGGTTAGGGGTGC-CGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATG 34717 | | | |||||| | |||||||| || || ||||| |||||||| || || Sbjct 136822 GGGCC---------TGGGTGCACCTTCAACATCGCCAGCTACGCCCTGCTCACTTATGTG 136872 Query 34718 ATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 ||||| || || || || || || | || ||||| ||||| ||||| || Sbjct 136873 ATCGCGCACATCACGGACCCAAAGCCCGGTGACTTTGTACATACTTTGGGAAATGCGTAT 136932 Query 34778 ATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTC 34837 | ||||| | ||||| | | || || ||||| || |||| || |||| ||| Sbjct 136933 GTTTACCTAAGTCACATTGCGAAACTGAAAATTCAGCTTCAGAGAGAACCAAGACCTTTC 136992 Query 34838 CCCCAGCTCAAAAT 34851 || |||||| ||| Sbjct 136993 CCAAAGCTCAGAAT 137006 Score = 93.3 bits (102), Expect = 4e-14 Identities = 173/254 (68%), Gaps = 10/254 (4%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 ||| |||||| ||||| |||| || |||| || ||||| || || | | ||| Sbjct 137006 ATTCTGAGCTTTGGGAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATG 136947 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || | ||||| | || ||||| ||||| ||||| || | || || || || Sbjct 136946 TGACTTAGGTAAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCC 136887 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG-GCACCCC 6672 || || ||||||| || |||||||| ||||| || || |||||||| | |||||| Sbjct 136886 GTGATGTGCGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTGCACCCA 136827 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732 | | || || | ||| | ||||||||||||||||| |||||| | ||| | Sbjct 136826 ---------GGCCCCTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCATTCACCACGAA 136776 Query 6733 GAATTGGCAGAGGG 6746 ||| |||| ||||| Sbjct 136775 GAACTGGCGGAGGG 136762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447503088320640