Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq44056 111 1e-19
seq44178 93.3 4e-14
seq83510 87.8 2e-12
>seq44056
Length=626226
Score = 111 bits (122), Expect = 1e-19
Identities = 166/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| ||||||| || || ||| |||||| || || || || || |
Sbjct 244786 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 244845
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
|| || || | || || ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 244846 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 244905
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | ||| ||||| ||||| ||||| || | | || || || | ||| |
Sbjct 244906 G-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 244964
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
| || | ||||| |||| ||||| | || || |||||||| ||||| |||
Sbjct 244965 CCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTTT 245017
>seq44178
Length=3241816
Score = 93.3 bits (102), Expect = 4e-14
Identities = 120/163 (74%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188
|| || ||||||||||| |||||||| |||||||||||||| |||||| | | ||| ||
Sbjct 924556 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG-ATACCCTCCTT 924614
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
||| ||||| ||||| || | | || || || | ||| || || | |||||
Sbjct 924615 GTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 924674
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291
|||| ||||| || || || |||||||| ||||| ||| ||
Sbjct 924675 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 924717
>seq83510
Length=277
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || ||| |||||| || || || || || | || || || | || ||
Sbjct 215 CACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 156
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||| ||||| ||||| || || ||||||||||| | || | | || ||||||
Sbjct 155 AAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTG 96
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| ||| || | | | | |||||| | ||| || || | ||||| | ||
Sbjct 95 GATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTT 36
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|||||||| ||||| || ||||| ||||||||
Sbjct 35 CCCCGTCAGGGTTTTCACGAAGATCTGCATCTT 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428836182890456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |