Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq43609 145 6e-30 seq30207 104 2e-17 seq36948 102 7e-17 seq44127 96.9 3e-15 seq23601 93.3 3e-14 >seq43609 Length=3422226 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||| Sbjct 1891083 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1891024 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || |||||||| |||||||| || ||||| | || | Sbjct 1891023 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1890964 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 1890963 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAGA 1890919 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 1886904 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGCGGAGAAC 1886845 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| ||| || ||||| |||||||| || || ||||| Sbjct 1886844 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 1886785 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||| | |||||||| || Sbjct 1886784 GACAGCTCTTTAGCATTTGTGGATCC 1886759 >seq30207 Length=2109381 Score = 104 bits (114), Expect = 2e-17 Identities = 182/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| ||||| || || || || |||||||| |||| || | || | | Sbjct 658283 ATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 658342 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || | ||||||||||||||||| ||| ||| ||||||| || Sbjct 658343 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 658402 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| || | ||||| || |||| | | | || || || Sbjct 658403 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATCCACTGGAAA-TATCTGAATTCATT-- 658459 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || | ||| |||| ||||| || ||||| || | |||||||||| ||||| || Sbjct 658460 ----CCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCTGATGCCCATGTTCTGG-GAC 658514 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 658515 ACAGCGACGATGCAGTTTAG 658534 >seq36948 Length=1024264 Score = 102 bits (112), Expect = 7e-17 Identities = 172/243 (71%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCC--CTGCTGAGGACTACGTTTAGCCTGTCT 114319 ||||||||| || || || || || || |||||||| |||| || | || | Sbjct 536917 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTTTCTGCTGAGAACTAAATTAATTCTACCC 536976 Query 114320 CTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACG 114379 | | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| Sbjct 536977 TTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGA 537036 Query 114380 TTCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTT 114438 ||||| |||||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 537037 TTCTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT 537095 Query 114439 GCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGA 114496 || | ||| |||| ||||| || ||||| || |||||||||||| ||| ||| Sbjct 537096 ------CCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGA 537149 Query 114497 CAC 114499 ||| Sbjct 537150 CAC 537152 >seq44127 Length=2713167 Score = 96.9 bits (106), Expect = 3e-15 Identities = 178/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || || | Sbjct 202103 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 202162 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| || Sbjct 202163 GAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGATT 202222 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| | | |||| ||| | || | | || || || Sbjct 202223 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-CTTCTCTGGAAATACCTGAATTCATT-- 202279 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 114500 || | |||| |||| ||||| || || || || || |||||||||| | | || Sbjct 202280 ----CCTGAGCGGAGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTTTGGGACA 202335 Query 114501 CTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 202336 CAGCGACGATGCAGTTTAG 202354 >seq23601 Length=1137639 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/236 (69%), Gaps = 11/236 (5%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| ||| || || |||| |||||||| |||| | | ||| |||| Sbjct 136995 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGACTTAGGT 136937 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | || | |||| ||||| || || ||||| || || || | | | | |||| ||| | Sbjct 136936 AAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCCGTGATGTGCG 136877 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGG-GCACCCCGAGCCCCATG 29788 | |||| || ||||| || | ||||||||||||||| |||| |||||| | Sbjct 136876 CGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTGCACCC---------AG 136826 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29844 |||||||||| || | |||||||| || ||||| || | |||| | ||||| Sbjct 136825 GCCCCTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAACTG 136770 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/172 (71%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||| |||||||||||| || | || || |||| | | || ||||| | ||| ||| Sbjct 135447 AAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTCTCAGTGGA-GAAT 135389 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| || || ||| | || || || | || ||||| Sbjct 135388 CCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCTCACTCCCTTGGAA 135329 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30188 || || ||||| | | |||||| || ||| |||||||||| ||||||| Sbjct 135328 GACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTCCTCCA 135277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405492400151632