Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq43609 145 6e-30
seq30207 104 2e-17
seq36948 102 7e-17
seq44127 96.9 3e-15
seq23601 93.3 3e-14
>seq43609
Length=3422226
Score = 145 bits (160), Expect = 6e-30
Identities = 131/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || |||
Sbjct 1891083 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1891024
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| || || |||||||| |||||||| || ||||| | || |
Sbjct 1891023 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1890964
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|| || ||||| || | ||||||||| ||||| || ||||| |||
Sbjct 1890963 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAGA 1890919
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||||||||| || || || || |||| ||| || ||||| ||| |||
Sbjct 1886904 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGCGGAGAAC 1886845
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||||||||||| ||| || ||||| |||||||| || || |||||
Sbjct 1886844 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 1886785
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| |||||||| | |||||||| ||
Sbjct 1886784 GACAGCTCTTTAGCATTTGTGGATCC 1886759
>seq30207
Length=2109381
Score = 104 bits (114), Expect = 2e-17
Identities = 182/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| ||||| || || || || |||||||| |||| || | || | |
Sbjct 658283 ATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 658342
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || | ||||||||||||||||| ||| ||| ||||||| ||
Sbjct 658343 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 658402
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 114440
||| |||||| | ||||| || | ||||| || |||| | | | || || ||
Sbjct 658403 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATCCACTGGAAA-TATCTGAATTCATT-- 658459
Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499
|| | ||| |||| ||||| || ||||| || | |||||||||| ||||| ||
Sbjct 658460 ----CCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCTGATGCCCATGTTCTGG-GAC 658514
Query 114500 GCTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 658515 ACAGCGACGATGCAGTTTAG 658534
>seq36948
Length=1024264
Score = 102 bits (112), Expect = 7e-17
Identities = 172/243 (71%), Gaps = 12/243 (5%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCC--CTGCTGAGGACTACGTTTAGCCTGTCT 114319
||||||||| || || || || || || |||||||| |||| || | || |
Sbjct 536917 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTTTCTGCTGAGAACTAAATTAATTCTACCC 536976
Query 114320 CTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACG 114379
| | ||||| |||||| || || ||||||||||||||||| ||||||| |||||||
Sbjct 536977 TTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGA 537036
Query 114380 TTCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTT 114438
||||| |||||| | ||||| || | |||| | ||| | || | | | || || ||
Sbjct 537037 TTCTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT 537095
Query 114439 GCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGA 114496
|| | ||| |||| ||||| || ||||| || |||||||||||| ||| |||
Sbjct 537096 ------CCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGA 537149
Query 114497 CAC 114499
|||
Sbjct 537150 CAC 537152
>seq44127
Length=2713167
Score = 96.9 bits (106), Expect = 3e-15
Identities = 178/259 (69%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || |||||||| |||| || | || || |
Sbjct 202103 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 202162
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| ||
Sbjct 202163 GAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGATT 202222
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440
||| |||||| | ||||| | | |||| ||| | || | | || || ||
Sbjct 202223 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-CTTCTCTGGAAATACCTGAATTCATT-- 202279
Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 114500
|| | |||| |||| ||||| || || || || || |||||||||| | | ||
Sbjct 202280 ----CCTGAGCGGAGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTTTGGGACA 202335
Query 114501 CTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 202336 CAGCGACGATGCAGTTTAG 202354
>seq23601
Length=1137639
Score = 93.3 bits (102), Expect = 3e-14
Identities = 163/236 (69%), Gaps = 11/236 (5%)
Strand=Plus/Minus
Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669
||||||||| ||| || || |||| |||||||| |||| | | ||| ||||
Sbjct 136995 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGACTTAGGT 136937
Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729
| || | |||| ||||| || || ||||| || || || | | | | |||| ||| |
Sbjct 136936 AAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCCGTGATGTGCG 136877
Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGG-GCACCCCGAGCCCCATG 29788
| |||| || ||||| || | ||||||||||||||| |||| |||||| |
Sbjct 136876 CGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTGCACCC---------AG 136826
Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29844
|||||||||| || | |||||||| || ||||| || | |||| | |||||
Sbjct 136825 GCCCCTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAACTG 136770
Score = 82.4 bits (90), Expect = 6e-11
Identities = 122/172 (71%), Gaps = 1/172 (1%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|||| |||||||||||| || | || || |||| | | || ||||| | ||| |||
Sbjct 135447 AAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTCTCAGTGGA-GAAT 135389
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||||||||||| || || ||| | || || || | || |||||
Sbjct 135388 CCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCTCACTCCCTTGGAA 135329
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30188
|| || ||||| | | |||||| || ||| |||||||||| |||||||
Sbjct 135328 GACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTCCTCCA 135277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405492400151632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |