Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9420 268 8e-67 seq38390 114 1e-20 seq40764 100 2e-16 seq43600 95.1 1e-14 seq37045 91.5 1e-13 seq43468 89.7 4e-13 seq1293 87.8 2e-12 seq33688 84.2 2e-11 >seq9420 Length=356144 Score = 268 bits (296), Expect = 8e-67 Identities = 593/871 (68%), Gaps = 30/871 (3%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| || || || | | |||||||| |||||||| ||||| Sbjct 52620 TACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCCATAAAGTCAAA 52674 Query 4331 CGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACAAGCAA-TCGGTCAGCT 4388 || || | | || || || ||| || || | || ||| || ||| || Sbjct 52675 TGGGTTCTCTACTCTGAAAACCTTGCTCAAACCC---AGTTCCA-GCATGTCTGTCTGCC 52730 Query 4389 ACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGC 4448 ||||| || || || || |||| || ||| || || ||||| ||||||| | Sbjct 52731 ACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTTCACAGGCAAG 52790 Query 4449 GCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508 || | || | || || |||||||| || || | | ||||| ||| ||| | | Sbjct 52791 GCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTACTCTC 52850 Query 4509 T-CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567 | || || |||||| | ||| | || | |||| | || ||||||||||| || || Sbjct 52851 TACTCCAG-TGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAA 52909 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 ||| || ||||||||||| ||||| || ||||| || | || ||||| | |||| || Sbjct 52910 ACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTT 52969 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 || ||||| ||||| | ||||| | |||||||||| ||||||| | || ||||| Sbjct 52970 CTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCGCTGCAGCAAA 53026 Query 4688 CGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 |||| | || || | | |||| ||||||| |||||| | || ||||| | Sbjct 53027 GACTACAACACGTTCACCATAGGTAGCTT-CTTTGTCCCCAATCCAGTGCAAGGCCCAAT 53085 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA--ATAATTTACTTTTTTC 4804 || || ||||| || || || || || | | || || | | || || | ||| | Sbjct 53086 CTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAATTCCCTTTCTT 53145 Query 4805 AAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT 4863 |||| |||| || |||||||| || || | |||||||||||||||||||| || | Sbjct 53146 ---TGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGTATGTTCT 53202 Query 4864 CTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAA 4923 |||| ||||| || || || | || || | |||||||| | |||||||| | | || Sbjct 53203 CTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAA 53262 Query 4924 ATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT 4983 ||| || || |||||||| |||||||| || ||||| |||||||| || ||| ||||| Sbjct 53263 ATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACAT 53322 Query 4984 GAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA--TCTTTAG 5040 | |||||||| | || | || | ||||| || || ||||| | |||| || || | Sbjct 53323 GGGATATAAAAT-CTCTCTCCTTGGGCTTCAGGGATTCCCAGT--GCCAAATGTCCTTGG 53379 Query 5041 TTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAA 5100 | || || || || | ||||| || || |||||||| || || ||||| ||| | Sbjct 53380 ACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGA 53439 Query 5101 TATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||||| | |||| | || | |||||||| Sbjct 53440 TATCATGGTACTCGGTGGGGAAGATGACAAA 53470 >seq38390 Length=1205360 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || |||| || ||||| || | | ||||| ||||| || ||| || |||| Sbjct 764598 AGCTCTTGTGAAAATGGACATTCAGATAGCGCTGCCTTCTGGGTGTTATGGAAGAGTAGC 764539 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | || || ||||| | ||||||||||| || || || || ||||| |||| | Sbjct 764538 TCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGGTGA 764479 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| ||||| ||||||| ||||| |||||| | | || Sbjct 764478 AGATTATAGAGGAAATGTTGGTATTGTACTGTTTAACTTTGGCAAAGAAAAGT-TTGAAG 764420 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||| ||| | || || || |||||| || Sbjct 764419 --TCAAAAAGGGTGATTGAACTGCACAGCTCATTTGCAAA 764382 >seq40764 Length=2310167 Score = 100 bits (110), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832 ||||| || ||||| || || | ||||| ||||| || ||| | ||| ||| | | Sbjct 1970921 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAAAGTAGTTCCATGGT 1970862 Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892 |||| ||||| | ||||||||||| || || || || ||||| ||||| | | |||| Sbjct 1970861 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGACGAAAATTATA 1970802 Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||| ||||| |||| ||||||||||||| Sbjct 1970801 GAGGAAATGTTGGTGTTGTACTGTTTAATTTTGG 1970768 >seq43600 Length=2353144 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 ||| |||| || ||||| || || | ||||| |||| || || || ||||||| | Sbjct 393914 AGTGAAAATGGACATTCAGATAGCTCTTCCTTCTGGGTTTTATAGAAGAGTAGCTCCATG 393855 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 ||||| ||||| | |||||||||||||| || || | ||||| ||||| ||| || Sbjct 393854 GTCTGGCTTGGCTGCAAAACACTTTATCGATGTAGGAACTGGTGTCATAGACAAAGATTA 393795 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAA 31947 ||||||| ||||| || ||||||||||||| |||||| | || ||| || Sbjct 393794 CTGAGGAAATGTTGGTGGTGAACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAGTCAGAA 393736 Query 31948 AAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGT 32007 ||| | ||| | | || || || ||||| ||| ||| | || ||||||||| Sbjct 393735 AAA--GTGATCGCATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAATAGAAGA 393678 Query 32008 AG 32009 || Sbjct 393677 AG 393676 >seq37045 Length=3135053 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 1581325 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 1581384 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 1581385 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 1581442 >seq43468 Length=1795776 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 1434819 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1434763 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 1434762 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1434703 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 1434702 ATAAGTCGAC 1434693 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 1453443 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 1453384 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 1453383 ATAAAATCAAAAGGATT 1453367 >seq1293 Length=703250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| | ||||| || || | ||||| || || || ||| || | |||| | ||| Sbjct 123789 AAAACGAACATTCAGATAGCTCTTCCTTCTGGATGTTAGGGAGGAGTGGCTCT--GGTCT 123846 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || ||||| | ||||||||||| || | || || ||||| |||||| ||| |||| | Sbjct 123847 GGCTTGGCTGCAAAACACTTTATAGATATAGGAGCTGGTGTCATAGATGAAGATTATACA 123906 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||| ||||| ||| || |||||||||| Sbjct 123907 GGAAATGTTGGCGCTGTCCTGCTTAATTTTGG 123938 >seq33688 Length=1916968 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || ||||| || ||||| || | | |||| |||| || ||| || ||||| Sbjct 898093 GCTCTTGTGAAAACGGACATTCAGATAGCACTTTCTTCTGGGTATTATGGAAGAGTAGCT 898034 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | ||| | ||||| | || ||| || | || || || || ||||| | |||| | Sbjct 898033 CCACGGTCTAGCTTGGCTGCAAATCACGTTGTAGATGTAGGAGCTGGTGTCACAGATGAA 897974 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 || ||||||||||| |||| |||| | ||||||||||| |||||| Sbjct 897973 GATTATAGAGGAAATATTGGTGTTGTAGTCTTTAATTTTGGCAAAGAAAA 897924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426344305165496