Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 268 8e-67
seq38390 114 1e-20
seq40764 100 2e-16
seq43600 95.1 1e-14
seq37045 91.5 1e-13
seq43468 89.7 4e-13
seq1293 87.8 2e-12
seq33688 84.2 2e-11
>seq9420
Length=356144
Score = 268 bits (296), Expect = 8e-67
Identities = 593/871 (68%), Gaps = 30/871 (3%)
Strand=Plus/Plus
Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330
||||| ||| || ||||| || || || | | |||||||| |||||||| |||||
Sbjct 52620 TACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCCATAAAGTCAAA 52674
Query 4331 CGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACAAGCAA-TCGGTCAGCT 4388
|| || | | || || || ||| || || | || ||| || ||| ||
Sbjct 52675 TGGGTTCTCTACTCTGAAAACCTTGCTCAAACCC---AGTTCCA-GCATGTCTGTCTGCC 52730
Query 4389 ACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGC 4448
||||| || || || || |||| || ||| || || ||||| ||||||| |
Sbjct 52731 ACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTTCACAGGCAAG 52790
Query 4449 GCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508
|| | || | || || |||||||| || || | | ||||| ||| ||| | |
Sbjct 52791 GCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTACTCTC 52850
Query 4509 T-CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567
| || || |||||| | ||| | || | |||| | || ||||||||||| || ||
Sbjct 52851 TACTCCAG-TGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAA 52909
Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627
||| || ||||||||||| ||||| || ||||| || | || ||||| | |||| ||
Sbjct 52910 ACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTT 52969
Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687
|| ||||| ||||| | ||||| | |||||||||| ||||||| | || |||||
Sbjct 52970 CTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCGCTGCAGCAAA 53026
Query 4688 CGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746
|||| | || || | | |||| ||||||| |||||| | || ||||| |
Sbjct 53027 GACTACAACACGTTCACCATAGGTAGCTT-CTTTGTCCCCAATCCAGTGCAAGGCCCAAT 53085
Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA--ATAATTTACTTTTTTC 4804
|| || ||||| || || || || || | | || || | | || || | ||| |
Sbjct 53086 CTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAATTCCCTTTCTT 53145
Query 4805 AAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT 4863
|||| |||| || |||||||| || || | |||||||||||||||||||| || |
Sbjct 53146 ---TGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGTATGTTCT 53202
Query 4864 CTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAA 4923
|||| ||||| || || || | || || | |||||||| | |||||||| | | ||
Sbjct 53203 CTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAA 53262
Query 4924 ATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT 4983
||| || || |||||||| |||||||| || ||||| |||||||| || ||| |||||
Sbjct 53263 ATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACAT 53322
Query 4984 GAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA--TCTTTAG 5040
| |||||||| | || | || | ||||| || || ||||| | |||| || || |
Sbjct 53323 GGGATATAAAAT-CTCTCTCCTTGGGCTTCAGGGATTCCCAGT--GCCAAATGTCCTTGG 53379
Query 5041 TTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAA 5100
| || || || || | ||||| || || |||||||| || || ||||| ||| |
Sbjct 53380 ACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGA 53439
Query 5101 TATCAGGATACTGAATCGGAAGTATGACAAA 5131
||||| | |||| | || | ||||||||
Sbjct 53440 TATCATGGTACTCGGTGGGGAAGATGACAAA 53470
>seq38390
Length=1205360
Score = 114 bits (126), Expect = 1e-20
Identities = 159/220 (72%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || |||| || ||||| || | | ||||| ||||| || ||| || ||||
Sbjct 764598 AGCTCTTGTGAAAATGGACATTCAGATAGCGCTGCCTTCTGGGTGTTATGGAAGAGTAGC 764539
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| | || || ||||| | ||||||||||| || || || || ||||| |||| |
Sbjct 764538 TCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGGTGA 764479
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| ||||||||||| ||||| ||||| ||||||| ||||| |||||| | | ||
Sbjct 764478 AGATTATAGAGGAAATGTTGGTATTGTACTGTTTAACTTTGGCAAAGAAAAGT-TTGAAG 764420
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
| |||||||| ||| | || || || |||||| ||
Sbjct 764419 --TCAAAAAGGGTGATTGAACTGCACAGCTCATTTGCAAA 764382
>seq40764
Length=2310167
Score = 100 bits (110), Expect = 2e-16
Identities = 115/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832
||||| || ||||| || || | ||||| ||||| || ||| | ||| ||| | |
Sbjct 1970921 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAAAGTAGTTCCATGGT 1970862
Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892
|||| ||||| | ||||||||||| || || || || ||||| ||||| | | ||||
Sbjct 1970861 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGACGAAAATTATA 1970802
Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||||||| ||||| |||| |||||||||||||
Sbjct 1970801 GAGGAAATGTTGGTGTTGTACTGTTTAATTTTGG 1970768
>seq43600
Length=2353144
Score = 95.1 bits (104), Expect = 1e-14
Identities = 168/242 (69%), Gaps = 6/242 (2%)
Strand=Plus/Minus
Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830
||| |||| || ||||| || || | ||||| |||| || || || ||||||| |
Sbjct 393914 AGTGAAAATGGACATTCAGATAGCTCTTCCTTCTGGGTTTTATAGAAGAGTAGCTCCATG 393855
Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890
||||| ||||| | |||||||||||||| || || | ||||| ||||| ||| ||
Sbjct 393854 GTCTGGCTTGGCTGCAAAACACTTTATCGATGTAGGAACTGGTGTCATAGACAAAGATTA 393795
Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAA 31947
||||||| ||||| || ||||||||||||| |||||| | || ||| ||
Sbjct 393794 CTGAGGAAATGTTGGTGGTGAACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAGTCAGAA 393736
Query 31948 AAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGT 32007
||| | ||| | | || || || ||||| ||| ||| | || |||||||||
Sbjct 393735 AAA--GTGATCGCATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAATAGAAGA 393678
Query 32008 AG 32009
||
Sbjct 393677 AG 393676
>seq37045
Length=3135053
Score = 91.5 bits (100), Expect = 1e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
|| |||| || |||||||| || || || |||||||||||||||||||| ||||| ||
Sbjct 1581325 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 1581384
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
||||| || || || || || || | |||||||| | |||||||| | | |||||
Sbjct 1581385 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 1581442
>seq43468
Length=1795776
Score = 89.7 bits (98), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| ||||| || || ||||||||||||||||| || || |
Sbjct 1434819 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1434763
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| || ||||||| || || | ||||| || |||||||| || | ||| || |
Sbjct 1434762 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1434703
Query 5041 TTAAATCAAC 5050
||| || ||
Sbjct 1434702 ATAAGTCGAC 1434693
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 1453443 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 1453384
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 1453383 ATAAAATCAAAAGGATT 1453367
>seq1293
Length=703250
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/152 (73%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834
||||| | ||||| || || | ||||| || || || ||| || | |||| | |||
Sbjct 123789 AAAACGAACATTCAGATAGCTCTTCCTTCTGGATGTTAGGGAGGAGTGGCTCT--GGTCT 123846
Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894
|| ||||| | ||||||||||| || | || || ||||| |||||| ||| |||| |
Sbjct 123847 GGCTTGGCTGCAAAACACTTTATAGATATAGGAGCTGGTGTCATAGATGAAGATTATACA 123906
Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||||| ||||| ||| || ||||||||||
Sbjct 123907 GGAAATGTTGGCGCTGTCCTGCTTAATTTTGG 123938
>seq33688
Length=1916968
Score = 84.2 bits (92), Expect = 2e-11
Identities = 121/170 (71%), Gaps = 3/170 (2%)
Strand=Plus/Minus
Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825
|| || || ||||| || ||||| || | | |||| |||| || ||| || |||||
Sbjct 898093 GCTCTTGTGAAAACGGACATTCAGATAGCACTTTCTTCTGGGTATTATGGAAGAGTAGCT 898034
Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885
|| | ||| | ||||| | || ||| || | || || || || ||||| | |||| |
Sbjct 898033 CCACGGTCTAGCTTGGCTGCAAATCACGTTGTAGATGTAGGAGCTGGTGTCACAGATGAA 897974
Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932
|| ||||||||||| |||| |||| | ||||||||||| ||||||
Sbjct 897973 GATTATAGAGGAAATATTGGTGTTGTAGTCTTTAATTTTGGCAAAGAAAA 897924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426344305165496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |