Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq43609 125 5e-24 seq23601 84.2 2e-11 >seq43609 Length=3422226 Score = 125 bits (138), Expect = 5e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 1891083 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1891024 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||| |||||||| ||||| || || ||||| | | Sbjct 1891023 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1890964 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 1890963 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 1890920 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||| ||| Sbjct 1886926 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 1886867 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 1886866 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 1886807 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || |||||||| | |||||||| || Sbjct 1886806 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 1886759 >seq23601 Length=1137639 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 ||| ||||| || |||| |||||| ||||| || | || || |||| | | || ||||| Sbjct 135459 GTATTCTGC-CCAAAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTC 135401 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | ||| ||| ||| ||||||||||||||| || || ||| | || || || | Sbjct 135400 TCAGTGGA-GAATCCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCT 135342 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 27677 || ||||| || || ||||| | | |||||| || ||| |||||||||| || Sbjct 135341 CACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTC 135282 Query 27678 CTCCA 27682 ||||| Sbjct 135281 CTCCA 135277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| ||| || || |||| |||||| | ||||| | | |||| |||| Sbjct 136995 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGACTTAGGT 136937 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | || | || | ||||| || || ||||| || || || | | | | |||| ||| | Sbjct 136936 AAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCCGTGATGTGCG 136877 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||| || ||||| || | ||||||||||||||| ||| | || || | Sbjct 136876 CGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAG--------GTGCACCCAGG 136825 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCAT 27322 |||| ||||| || | ||||| || || ||||| |||| Sbjct 136824 CCCCTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCAT 136786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368896939460072