Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq43609 125 5e-24
seq23601 84.2 2e-11
>seq43609
Length=3422226
Score = 125 bits (138), Expect = 5e-24
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||
Sbjct 1891083 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1891024
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| ||||| |||||||| ||||| || || ||||| | |
Sbjct 1891023 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1890964
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
|| || ||||| || | ||| ||||| ||||| || ||||| ||
Sbjct 1890963 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 1890920
Score = 114 bits (126), Expect = 1e-20
Identities = 126/168 (75%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| ||||| || ||||||||||| ||||| || || || || |||| |||
Sbjct 1886926 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 1886867
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| ||
Sbjct 1886866 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 1886807
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
|||||| || || ||||| || |||||||| | |||||||| ||
Sbjct 1886806 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 1886759
>seq23601
Length=1137639
Score = 84.2 bits (92), Expect = 2e-11
Identities = 131/185 (71%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557
||| ||||| || |||| |||||| ||||| || | || || |||| | | || |||||
Sbjct 135459 GTATTCTGC-CCAAAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTC 135401
Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617
| ||| ||| ||| ||||||||||||||| || || ||| | || || || |
Sbjct 135400 TCAGTGGA-GAATCCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCT 135342
Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 27677
|| ||||| || || ||||| | | |||||| || ||| |||||||||| ||
Sbjct 135341 CACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTC 135282
Query 27678 CTCCA 27682
|||||
Sbjct 135281 CTCCA 135277
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 9/219 (4%)
Strand=Plus/Minus
Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163
||||||||| ||| || || |||| |||||| | ||||| | | |||| ||||
Sbjct 136995 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGACTTAGGT 136937
Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223
| || | || | ||||| || || ||||| || || || | | | | |||| ||| |
Sbjct 136936 AAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCCGTGATGTGCG 136877
Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283
| |||| || ||||| || | ||||||||||||||| ||| | || || |
Sbjct 136876 CGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAG--------GTGCACCCAGG 136825
Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCAT 27322
|||| ||||| || | ||||| || || ||||| ||||
Sbjct 136824 CCCCTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCAT 136786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 368896939460072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |