Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 370 1e-97
seq30183 212 9e-50
seq37045 111 2e-19
seq38390 107 3e-18
seq19734 105 9e-18
seq43468 84.2 3e-11
>seq9420
Length=356144
Score = 370 bits (410), Expect = 1e-97
Identities = 648/939 (69%), Gaps = 17/939 (2%)
Strand=Plus/Plus
Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845
|||| |||| |||||| |||| || | |||| ||| ||| | || |||| |||||
Sbjct 52542 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCC 52601
Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905
||| | ||||| || | || | ||||| || || || || ||| || ||| ||
Sbjct 52602 CATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAAT 52656
Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965
||| |||||||| |||||||| || || | | ||| || | || || | |||
Sbjct 52657 ATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAG 52716
Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025
|| |||| ||||| || || || || ||| ||||| | |||||||| || ||
Sbjct 52717 CAT--GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 52774
Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085
| | || || || | ||||| || || || || ||||| || ||||||| | ||
Sbjct 52775 AGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAAT 52834
Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145
||| | |||| | | ||| |||| | | || ||||| ||||| | || ||
Sbjct 52835 TATTTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGC 52894
Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205
||||||||| || | ||| |||||||| ||||| | ||| || ||||||||||| || ||
Sbjct 52895 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 52954
Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265
||| ||||| ||||| |||||||| ||||| | || ||| | |||||||||| ||||
Sbjct 52955 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCC 53011
Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322
||| | || ||||| | || | || || || | ||||| |||| |||||
Sbjct 53012 TTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCA 53071
Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382
| |||||||| ||||||||||| ||||||||||| ||||| | ||||| | |||
Sbjct 53072 GTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAG 53131
Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442
||| | |||| ||| |||||| | |||||| || || | | |||||||||||| ||
Sbjct 53132 AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGA 53191
Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502
|| || || || || || || || || || | ||||| | |||||||| ||||| ||
Sbjct 53192 ATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAAC 53251
Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562
|| | |||||| || |||| || ||||||||||| |||||||| || ||||| ||
Sbjct 53252 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 53311
Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622
| | ||||| ||||||| | | || |||| |||| | ||||| ||
Sbjct 53312 AACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCAAAT 53371
Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682
|| || || | || || || || || ||||| || || || || || || ||||||||
Sbjct 53372 GTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACAT 53431
Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
| ||| |||||| ||| | | | ||||| || |||||
Sbjct 53432 CTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470
>seq30183
Length=85853
Score = 212 bits (234), Expect = 9e-50
Identities = 387/561 (69%), Gaps = 12/561 (2%)
Strand=Plus/Plus
Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200
|| |||| | ||| || | ||| ||||| || ||||| | ||| || |||||||||||
Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502
Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260
|| ||||| ||||| ||||| |||||||| ||||| || ||||| ||||||||| |
Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562
Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTG 48316
||| ||| || ||||| || | || | ||||| ||||| | ||| |||
Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAAC-GTCTTTGTTCCC 31621
Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376
||||| ||||| | ||||||||||| |||| |||||||||||| || |||||
Sbjct 31622 AATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATT 31680
Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436
|||||||| | |||| ||| ||||||||| || || || || | ||| ||| ||
Sbjct 31681 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGATTATTTAT 31738
Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496
|| || || | ||||| | || | || || || || || || | |||||| ||
Sbjct 31739 GTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAAT 31798
Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556
||| | || | |||| |||| |||| || |||| |||||| ||||||| || ||
Sbjct 31799 CTGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 31858
Query 48557 AAAAAATGC--TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614
||| || || |||| | | | ||||||||| |||| | | |||| | ||||
Sbjct 31859 AAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAG 31916
Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674
| || || || || | || ||||| | || |||| || || ||||| ||||
Sbjct 31917 TGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 31976
Query 48675 TTATACATATTCCATATATCA 48695
|||||| | ||||| ||||||
Sbjct 31977 TTATACGTTTTCCAAATATCA 31997
>seq37045
Length=3135053
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| || || | ||| || ||||||||||| || ||||| ||||| ||||| |||
Sbjct 1579224 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1579283
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||| | || ||||| || |||||||| |||||||| || || ||||| ||
Sbjct 1579284 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 1579342
Score = 86.0 bits (94), Expect = 9e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450
|||| ||| |||||| | |||||| || || | ||||||||||||||| || || || |
Sbjct 1581317 TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 1581376
Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
|||| || || || || || || || ||||| | |||||||| ||||| || ||
Sbjct 1581377 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 1581431
>seq38390
Length=1205360
Score = 107 bits (118), Expect = 3e-18
Identities = 246/362 (68%), Gaps = 19/362 (5%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| | | ||||| ||| |||| | || ||| |||||
Sbjct 764300 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCGGTATCATCCAAAGCTTGAACTTCT 764357
Query 45934 TTCAGATCAGGATAATATA-TACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992
| | || |||||| | | | |||| | || || || || ||| ||||||| | ||
Sbjct 764358 TCTATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTT 764417
Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052
| |||||| | ||||| ||| || | ||| | | |||| | |||||||||||
Sbjct 764418 GACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCTCTATAATC 764477
Query 46053 TTCATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAGG 46109
|||| |||| || || |||| ||||| ||| |||| || || || || | ||
Sbjct 764478 TTCACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGG 764537
Query 46110 AGCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165
||||| |||||||||| ||||| |||| | ||| |||| || |||| | ||
Sbjct 764538 AGCTACTCTTCCATAACACCCAGAA----GGCAGCGCTATCTGAATGTCCATTTTCA-CA 764592
Query 46166 ATCTCCTTTCTCCA-GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224
| ||||||||| | || || || || || || |||||||| | || || || ||
Sbjct 764593 A-GAGCTTTCTCCATAGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCG 764651
Query 46225 GC 46226
||
Sbjct 764652 GC 764653
>seq19734
Length=6466590
Score = 105 bits (116), Expect = 9e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| | |||||||| |||||
Sbjct 5914001 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 5913942
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
||||||||||| |||| || ||||| || || || || || | ||| | |||||||
Sbjct 5913941 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 5913882
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
||||| || ||||||||| ||
Sbjct 5913881 ATATGTTGTGGTCTTTCAGCC 5913861
Score = 105 bits (116), Expect = 9e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | ||
Sbjct 5935838 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 5935779
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || |||| || |||||||| ||||| || ||||| || || | | ||||||
Sbjct 5935778 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 5935719
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 5935718 TTTCTTATACCAT 5935706
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||| ||||| ||||||||||| ||||| ||||||| || ||||||| || | ||
Sbjct 5924694 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 5924635
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| || || || | || || ||||||| ||
Sbjct 5924634 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 5924575
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| || || || || | ||||||| ||
Sbjct 5924574 TCCAGGTAAATAGCAAATGCTCCAGGACG 5924546
>seq43468
Length=1795776
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697
||| ||||| |||||||| || || |||| ||| | ||||||||| ||||| ||||||
Sbjct 1428411 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 1428352
Query 48698 GTATTGGATTGGGAAAATAACAAA 48721
|||||||||||| || || |||||
Sbjct 1428351 GTATTGGATTGGAAAGATGACAAA 1428328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693492100519680
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