Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 325 6e-84
seq30183 212 9e-50
seq43468 111 2e-19
seq37045 111 2e-19
seq19734 105 1e-17
seq38390 89.7 7e-13
>seq9420
Length=356144
Score = 325 bits (360), Expect = 6e-84
Identities = 639/938 (68%), Gaps = 24/938 (3%)
Strand=Plus/Plus
Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339
|||| ||||| |||| || | |||| ||| ||| | | ||||| ||||||||
Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606
Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399
| || || || | ||| | ||||| || || || || ||| || ||| ||||| |
Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCT 52661
Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459
||||||| ||||| || || || | ||| || | || || | ||| ||
Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCAT-- 52719
Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA---CAATTCATTCCTATGA 46516
|||| ||||| || || || || || || | ||||| | |||||||| || ||
Sbjct 52720 GTCTGTCTGCCACAAACTCAATGTA---TTGCTTCATTAGAGTGCAATTCATCCCAATAG 52776
Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TT 46575
| || || || | ||||| || || || || ||||| || ||||||| |||| ||
Sbjct 52777 GCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATT-GATAATT 52835
Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635
|| | ||||| | | ||| |||| || | || ||||| ||||| | || |||
Sbjct 52836 ATTTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCA 52895
Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695
|||||||| || | || |||||||| ||||| | ||| || ||||||||||| ||||||
Sbjct 52896 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGC 52955
Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755
|| ||||| || || |||||||| ||||| | || ||| | |||||||||| |||||
Sbjct 52956 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCT 53012
Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCAC 46812
|| | || || || | |||| | || || || | || || || | ||||||
Sbjct 53013 TCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAG 53072
Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872
|||||||| ||||| ||||| ||||||||||| ||||| | ||||| | ||||
Sbjct 53073 TGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGA 53132
Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932
|| | |||| | |||||| | || || || || | | |||||||||||| |||
Sbjct 53133 AATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAA 53192
Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992
|| ||||| || || || || || || || | ||||| | ||||| || ||||| ||
Sbjct 53193 TGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACT 53252
Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052
||| | |||||| || ||| || ||||| ||||| |||||||| || ||||| ||
Sbjct 53253 TCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAA 53312
Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112
||| ||||| ||||||| | | || | || |||| | ||||| ||
Sbjct 53313 ACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCAAATG 53372
Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172
|| || || | || || || || || |||||||| || || || || || ||||||||
Sbjct 53373 TCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 53432
Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210
| ||| |||||| | || | | | || || || |||||
Sbjct 53433 TGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470
>seq30183
Length=85853
Score = 212 bits (234), Expect = 9e-50
Identities = 391/565 (69%), Gaps = 14/565 (2%)
Strand=Plus/Plus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| |||| | ||| || | || ||||| || ||||| | ||| || |||||||||||
Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749
|||||||| ||||| || || |||||||| ||||| || ||||| ||||||||| |
Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562
Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC----GTAACTGGCATCATTATG 46805
||| ||| || || || || ||| | ||||| ||||| | | | ||
Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAAC-GTCTTTGTTCCC 31621
Query 46806 AATCCACCTTTGAG-CCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864
|||||| | || ||||| | ||||| ||||| ||||| ||||||||||| || ||||
Sbjct 31622 AATCCAA-TACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCAT 31679
Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924
| |||||||| | |||| | |||||||| || ||| || || | ||| ||| |
Sbjct 31680 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGATTATTTA 31737
Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984
| || ||||| ||||||| |||| | || || || || || || | ||| ||||
Sbjct 31738 TGTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAA 31797
Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044
|||| | ||| | |||| |||| ||| || |||| ||||| ||||||| || |
Sbjct 31798 TCTGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTG 31857
Query 47045 CAAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102
|||| || ||| |||| | | | ||||||||| |||| || | |||| | |||
Sbjct 31858 CAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCA 31915
Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162
|| || || || || | || ||||| | || ||||||| || ||||| ||||
Sbjct 31916 GTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTT 31975
Query 47163 TTTATACATATTCCATATATCACGA 47187
|||||| | ||||| |||||| ||
Sbjct 31976 CTTATACGTTTTCCAAATATCATGA 32000
>seq43468
Length=1795776
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| ||||| || ||||| || || | ||| |
Sbjct 1442084 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1442025
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || |
Sbjct 1442024 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1441965
Query 46772 CGACAAGTCTCTCTCC 46787
| || | ||| || ||
Sbjct 1441964 CCACCACTCTTTCCCC 1441949
Score = 89.7 bits (98), Expect = 7e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| |
Sbjct 1428411 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 1428352
Query 47187 ATATTGGATCGGAAAAATAACAAA 47210
|||||||| ||||| || |||||
Sbjct 1428351 GTATTGGATTGGAAAGATGACAAA 1428328
>seq37045
Length=3135053
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| || || | ||| || ||||||||||| |||||||| ||||| || || |||
Sbjct 1579224 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1579283
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| || |||||||| |||||||| || || || || ||
Sbjct 1579284 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 1579343
Query 46774 ACAA 46777
||||
Sbjct 1579344 ACAA 1579347
Score = 86.0 bits (94), Expect = 9e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||| | || || || || | ||||||||||||||| ||||| |||||||| || ||
Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
|| || || || || ||||| | ||||| |||||||| || ||| | |||||| ||
Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446
>seq19734
Length=6466590
Score = 105 bits (116), Expect = 1e-17
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | ||
Sbjct 5935838 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 5935779
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| || |||| || |||||||| ||||| || ||||| || || | | ||||||
Sbjct 5935778 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 5935719
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 5935718 TTTCTTATACCAT 5935706
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| |||||||| ||||| | || || || || || || || || || ||
Sbjct 5906919 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGATA 5906860
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| |
Sbjct 5906859 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 5906800
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| | || || || || | || | ||||| || ||||||||||
Sbjct 5906799 TCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 5906754
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | || ||||| |||||||| ||||| | |||||||| |||||
Sbjct 5914001 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 5913942
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
||||||||||| |||| || || || || || || || |||| || | |||||||
Sbjct 5913941 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 5913882
Query 77114 ATATGCTGAGGTCGTTC 77130
||||| || |||| |||
Sbjct 5913881 ATATGTTGTGGTCTTTC 5913865
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657
|| || ||||| ||||||||||| ||||| ||||||| || ||||||| || | |
Sbjct 5924694 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 5924635
Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717
||||| |||||||| ||||| || | ||| ||||| || | || || ||||||| ||
Sbjct 5924634 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 5924575
Query 76718 TCTAGATATATCGC 76731
|| || || || ||
Sbjct 5924574 TCCAGGTAAATAGC 5924561
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||
Sbjct 5925121 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 5925062
Query 76580 CACTC 76584
|| ||
Sbjct 5925061 CAGTC 5925057
>seq38390
Length=1205360
Score = 89.7 bits (98), Expect = 7e-13
Identities = 242/362 (67%), Gaps = 19/362 (5%)
Strand=Plus/Plus
Query 44363 TCCCGTTGATCCAAATCCT--TGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCC 44420
||| || || ||||| ||| ||| | | || | |||| ||| | || ||| |||||
Sbjct 764300 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCGGTATCATCCAAAGCTTGAACTTCT 764357
Query 44421 TCTAGATCAGGATAATATA-TACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATT 44479
|||| || |||||| | | | |||| | || || || || ||| |||||| | ||
Sbjct 764358 TCTATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTT 764417
Query 44480 TATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATC 44539
| || ||| | ||||| ||| || | || | | |||| || || ||||||||
Sbjct 764418 GACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCTCTATAATC 764477
Query 44540 TTCATCTATTACTCCACCTCCCACATCAATA---CCTTTTAGAGAAAGACCCGATCTAGG 44596
|||| |||| || ||| |||| ||||||||| |||| || | || || | ||
Sbjct 764478 TTCACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGG 764537
Query 44597 CGCTATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCA 44652
|||| |||||||||| ||||| |||| | || |||| || |||| | ||
Sbjct 764538 AGCTACTCTTCCATAACACCCAGAA----GGCAGCGCTATCTGAATGTCCATTTTCA-CA 764592
Query 44653 ACCGTCTTTCTCCA-GGAGGGATAGTATAATCGTAAGCACTGTATAAATCATATCCTGCC 44711
| | ||||||||| | || || || ||||| || |||||||| | || || || ||
Sbjct 764593 AGAG-CTTTCTCCATAGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCG 764651
Query 44712 GC 44713
||
Sbjct 764652 GC 764653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 711726760419840
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