Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9420 325 6e-84 seq30183 212 9e-50 seq43468 111 2e-19 seq37045 111 2e-19 seq19734 105 1e-17 seq38390 89.7 7e-13 >seq9420 Length=356144 Score = 325 bits (360), Expect = 6e-84 Identities = 639/938 (68%), Gaps = 24/938 (3%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||| ||||| |||| || | |||| ||| ||| | | ||||| |||||||| Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || || || | ||| | ||||| || || || || ||| || ||| ||||| | Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCT 52661 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 ||||||| ||||| || || || | ||| || | || || | ||| || Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCAT-- 52719 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA---CAATTCATTCCTATGA 46516 |||| ||||| || || || || || || | ||||| | |||||||| || || Sbjct 52720 GTCTGTCTGCCACAAACTCAATGTA---TTGCTTCATTAGAGTGCAATTCATCCCAATAG 52776 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TT 46575 | || || || | ||||| || || || || ||||| || ||||||| |||| || Sbjct 52777 GCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATT-GATAATT 52835 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || | ||||| | | ||| |||| || | || ||||| ||||| | || ||| Sbjct 52836 ATTTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCA 52895 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 |||||||| || | || |||||||| ||||| | ||| || ||||||||||| |||||| Sbjct 52896 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGC 52955 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || ||||| || || |||||||| ||||| | || ||| | |||||||||| ||||| Sbjct 52956 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCT 53012 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCAC 46812 || | || || || | |||| | || || || | || || || | |||||| Sbjct 53013 TCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAG 53072 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 |||||||| ||||| ||||| ||||||||||| ||||| | ||||| | |||| Sbjct 53073 TGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGA 53132 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 || | |||| | |||||| | || || || || | | |||||||||||| ||| Sbjct 53133 AATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAA 53192 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 || ||||| || || || || || || || | ||||| | ||||| || ||||| || Sbjct 53193 TGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACT 53252 Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 ||| | |||||| || ||| || ||||| ||||| |||||||| || ||||| || Sbjct 53253 TCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAA 53312 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112 ||| ||||| ||||||| | | || | || |||| | ||||| || Sbjct 53313 ACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCAAATG 53372 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 || || || | || || || || || |||||||| || || || || || |||||||| Sbjct 53373 TCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 53432 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | ||| |||||| | || | | | || || || ||||| Sbjct 53433 TGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470 >seq30183 Length=85853 Score = 212 bits (234), Expect = 9e-50 Identities = 391/565 (69%), Gaps = 14/565 (2%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || |||| | ||| || | || ||||| || ||||| | ||| || ||||||||||| Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| ||||| || || |||||||| ||||| || ||||| ||||||||| | Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC----GTAACTGGCATCATTATG 46805 ||| ||| || || || || ||| | ||||| ||||| | | | || Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAAC-GTCTTTGTTCCC 31621 Query 46806 AATCCACCTTTGAG-CCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 |||||| | || ||||| | ||||| ||||| ||||| ||||||||||| || |||| Sbjct 31622 AATCCAA-TACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCAT 31679 Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924 | |||||||| | |||| | |||||||| || ||| || || | ||| ||| | Sbjct 31680 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGATTATTTA 31737 Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 | || ||||| ||||||| |||| | || || || || || || | ||| |||| Sbjct 31738 TGTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAA 31797 Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 |||| | ||| | |||| |||| ||| || |||| ||||| ||||||| || | Sbjct 31798 TCTGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTG 31857 Query 47045 CAAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 |||| || ||| |||| | | | ||||||||| |||| || | |||| | ||| Sbjct 31858 CAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCA 31915 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 || || || || || | || ||||| | || ||||||| || ||||| |||| Sbjct 31916 GTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTT 31975 Query 47163 TTTATACATATTCCATATATCACGA 47187 |||||| | ||||| |||||| || Sbjct 31976 CTTATACGTTTTCCAAATATCATGA 32000 >seq43468 Length=1795776 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | ||| | Sbjct 1442084 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1442025 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 1442024 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1441965 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 1441964 CCACCACTCTTTCCCC 1441949 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 1428411 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 1428352 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 |||||||| ||||| || ||||| Sbjct 1428351 GTATTGGATTGGAAAGATGACAAA 1428328 >seq37045 Length=3135053 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || ||||||||||| |||||||| ||||| || || ||| Sbjct 1579224 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1579283 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| || |||||||| |||||||| || || || || || Sbjct 1579284 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 1579343 Query 46774 ACAA 46777 |||| Sbjct 1579344 ACAA 1579347 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | || || || || | ||||||||||||||| ||||| |||||||| || || Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || ||||| | ||||| |||||||| || ||| | |||||| || Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446 >seq19734 Length=6466590 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 5935838 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 5935779 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 5935778 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 5935719 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 5935718 TTTCTTATACCAT 5935706 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 5906919 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGATA 5906860 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 5906859 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 5906800 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || | || | ||||| || |||||||||| Sbjct 5906799 TCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 5906754 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| |||||||| ||||| | |||||||| ||||| Sbjct 5914001 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 5913942 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| |||| || || || || || || || |||| || | ||||||| Sbjct 5913941 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 5913882 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 5913881 ATATGTTGTGGTCTTTC 5913865 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || ||||| ||||||||||| ||||| ||||||| || ||||||| || | | Sbjct 5924694 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 5924635 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 ||||| |||||||| ||||| || | ||| ||||| || | || || ||||||| || Sbjct 5924634 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 5924575 Query 76718 TCTAGATATATCGC 76731 || || || || || Sbjct 5924574 TCCAGGTAAATAGC 5924561 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||| Sbjct 5925121 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 5925062 Query 76580 CACTC 76584 || || Sbjct 5925061 CAGTC 5925057 >seq38390 Length=1205360 Score = 89.7 bits (98), Expect = 7e-13 Identities = 242/362 (67%), Gaps = 19/362 (5%) Strand=Plus/Plus Query 44363 TCCCGTTGATCCAAATCCT--TGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCC 44420 ||| || || ||||| ||| ||| | | || | |||| ||| | || ||| ||||| Sbjct 764300 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCGGTATCATCCAAAGCTTGAACTTCT 764357 Query 44421 TCTAGATCAGGATAATATA-TACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATT 44479 |||| || |||||| | | | |||| | || || || || ||| |||||| | || Sbjct 764358 TCTATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTT 764417 Query 44480 TATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATC 44539 | || ||| | ||||| ||| || | || | | |||| || || |||||||| Sbjct 764418 GACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCTCTATAATC 764477 Query 44540 TTCATCTATTACTCCACCTCCCACATCAATA---CCTTTTAGAGAAAGACCCGATCTAGG 44596 |||| |||| || ||| |||| ||||||||| |||| || | || || | || Sbjct 764478 TTCACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGG 764537 Query 44597 CGCTATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCA 44652 |||| |||||||||| ||||| |||| | || |||| || |||| | || Sbjct 764538 AGCTACTCTTCCATAACACCCAGAA----GGCAGCGCTATCTGAATGTCCATTTTCA-CA 764592 Query 44653 ACCGTCTTTCTCCA-GGAGGGATAGTATAATCGTAAGCACTGTATAAATCATATCCTGCC 44711 | | ||||||||| | || || || ||||| || |||||||| | || || || || Sbjct 764593 AGAG-CTTTCTCCATAGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCG 764651 Query 44712 GC 44713 || Sbjct 764652 GC 764653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711726760419840