Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1269 188 1e-42 seq43696 122 1e-22 >seq1269 Length=3008169 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| |||| |||||| ||||| || ||||| || ||||||||||| Sbjct 1529998 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 1529939 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 1529938 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 1529879 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| | || || |||| ||||| |||||||| | Sbjct 1529878 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 1529819 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 1529818 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 1529770 Score = 179 bits (198), Expect = 5e-40 Identities = 234/324 (72%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323 |||| |||||| ||| ||||| | ||| | | || ||||| ||||| ||||| | Sbjct 1532042 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 1531983 Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383 |||| ||||||||||| | || | |||| ||| || ||||| ||||| || || Sbjct 1531982 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 1531923 Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443 || || ||||||||||| | || || || || || || |||| || ||||| | |||| Sbjct 1531922 GTACTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 1531863 Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503 ||||| || || | || | ||| ||||||| |||||||| | ||||| |||||||| Sbjct 1531862 AACGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 1531803 Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563 |||| | | | |||||||||||||| |||| ||| ||||| || || | || Sbjct 1531802 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCGTAGAGTGCTTCCAACTCT 1531743 Query 8564 GCAGCGATCTCCTTTTCTCCTGTT 8587 |||| || ||||||||||||||| Sbjct 1531742 GCAGACATTTCCTTTTCTCCTGTT 1531719 Score = 127 bits (140), Expect = 3e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 1528842 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 1528783 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| |||| || || ||||| | ||| |||||||||||||| Sbjct 1528782 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCCTGGGGATC 1528723 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 1528722 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 1528685 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 9906 AGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTG 9965 |||||||||| || || | ||||| || || || | ||| || ||||| || || | Sbjct 1528233 AGTCACCTTTCACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGG 1528174 Query 9966 CGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATA 10025 ||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| Sbjct 1528173 TATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAG 1528114 Query 10026 TGGGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 | || || ||||||||||||| ||||| |||| Sbjct 1528113 TTGGTGGACTGTCAATCAAATGTGATCTGGCTGA 1528080 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| || | ||||| ||| || || | Sbjct 1530591 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGCAATTCCATGTTCC 1530532 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | ||| || |||||||||| || ||| | |||| || || | || ||| | Sbjct 1530531 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTATTTCTGGTCATGAATTT 1530474 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| || | |||||||||||| | | |||||||| | | |||| Sbjct 1530473 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATAC 1530414 Query 9122 GATTTTGGTACTGGAA 9137 |||||||||||||||| Sbjct 1530413 GATTTTGGTACTGGAA 1530398 >seq43696 Length=1423797 Score = 122 bits (134), Expect = 1e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||||| || |||| || ||||| || ||||| |||||||||||| |||| | Sbjct 1398852 TCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 1398793 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 1398792 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 1398733 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || || || | ||| ||| || |||||| | | | || | ||| | ||||| Sbjct 1398732 TCTCCCCAAATATAGAGTTTGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 1398673 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | |||||| || || || | || || || |||||||| ||||||| Sbjct 1398672 ACGCATCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCTG 1398616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715662482388480