Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1269 188 1e-42
seq43696 122 1e-22
>seq1269
Length=3008169
Score = 188 bits (208), Expect = 1e-42
Identities = 179/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| ||||| |||| |||||| ||||| || ||||| || |||||||||||
Sbjct 1529998 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 1529939
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| |||||
Sbjct 1529938 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 1529879
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | |||| | || || |||| ||||| |||||||| |
Sbjct 1529878 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 1529819
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
|||| |||||||| | ||| |||||||| || || ||||| ||||
Sbjct 1529818 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 1529770
Score = 179 bits (198), Expect = 5e-40
Identities = 234/324 (72%), Gaps = 0/324 (0%)
Strand=Plus/Minus
Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323
|||| |||||| ||| ||||| | ||| | | || ||||| ||||| ||||| |
Sbjct 1532042 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 1531983
Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383
|||| ||||||||||| | || | |||| ||| || ||||| ||||| || ||
Sbjct 1531982 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 1531923
Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443
|| || ||||||||||| | || || || || || || |||| || ||||| | ||||
Sbjct 1531922 GTACTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 1531863
Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503
||||| || || | || | ||| ||||||| |||||||| | ||||| ||||||||
Sbjct 1531862 AACGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 1531803
Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563
|||| | | | |||||||||||||| |||| ||| ||||| || || | ||
Sbjct 1531802 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCGTAGAGTGCTTCCAACTCT 1531743
Query 8564 GCAGCGATCTCCTTTTCTCCTGTT 8587
|||| || |||||||||||||||
Sbjct 1531742 GCAGACATTTCCTTTTCTCCTGTT 1531719
Score = 127 bits (140), Expect = 3e-24
Identities = 123/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | ||
Sbjct 1528842 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 1528783
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| |||||||| || ||| |||| || || ||||| | ||| ||||||||||||||
Sbjct 1528782 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCCTGGGGATC 1528723
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806
|| |||| | || | |||||| |||||||||||
Sbjct 1528722 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 1528685
Score = 98.7 bits (108), Expect = 1e-15
Identities = 114/154 (74%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 9906 AGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTG 9965
|||||||||| || || | ||||| || || || | ||| || ||||| || || |
Sbjct 1528233 AGTCACCTTTCACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGG 1528174
Query 9966 CGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATA 10025
||||||||||| || ||||| |||||||||||| ||| | ||||| | |||||
Sbjct 1528173 TATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAG 1528114
Query 10026 TGGGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
| || || ||||||||||||| ||||| ||||
Sbjct 1528113 TTGGTGGACTGTCAATCAAATGTGATCTGGCTGA 1528080
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| || ||||| || ||||| ||||| || | ||||| ||| || || |
Sbjct 1530591 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGCAATTCCATGTTCC 1530532
Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061
| | ||| || |||||||||| || ||| | |||| || || | || ||| |
Sbjct 1530531 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTATTTCTGGTCATGAATTT 1530474
Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121
||| | || |||| || | |||||||||||| | | |||||||| | | ||||
Sbjct 1530473 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATAC 1530414
Query 9122 GATTTTGGTACTGGAA 9137
||||||||||||||||
Sbjct 1530413 GATTTTGGTACTGGAA 1530398
>seq43696
Length=1423797
Score = 122 bits (134), Expect = 1e-22
Identities = 169/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
|||||||||| || |||| || ||||| || ||||| |||||||||||| |||| |
Sbjct 1398852 TCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 1398793
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || |
Sbjct 1398792 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 1398733
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || || || | ||| ||| || |||||| | | | || | ||| | |||||
Sbjct 1398732 TCTCCCCAAATATAGAGTTTGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 1398673
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| || | |||||| || || || | || || || |||||||| |||||||
Sbjct 1398672 ACGCATCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCTG 1398616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715662482388480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |