Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq44056 145 7e-30
seq83510 127 2e-24
seq42152 127 2e-24
seq112392 105 6e-18
seq44178 105 6e-18
seq41127 105 6e-18
seq43203 95.1 1e-14
>seq44056
Length=626226
Score = 145 bits (160), Expect = 7e-30
Identities = 173/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || |||||||| ||||| ||| ||| || || ||||| ||||| ||
Sbjct 244786 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 244845
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| | || || ||||| |||||||| |||||||| ||||| ||||| | ||
Sbjct 244846 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 244905
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCA 41813
| | ||||||||| ||| |||| |||| ||| || | |||| || | ||| |
Sbjct 244906 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 244964
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| | || || ||||| ||||| | |||||||| || |||||||||||
Sbjct 244965 CCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTT 245016
>seq83510
Length=277
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| || || ||| ||| ||||| ||||| ||||| |||
Sbjct 232 CCACCACGCAGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 173
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||||||||| || ||||| ||||| ||||| | |||
Sbjct 172 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGGA 113
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | ||||||||| ||| || ||||| | ||| ||| | ||| |||
Sbjct 112 ATACCTTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGACC 53
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| | || || || || |||||||| || || ||||| |||||||| ||
Sbjct 52 TCAAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATCTT 3
>seq42152
Length=979470
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| || ||||||||| ||||| ||||| || || |||||
Sbjct 315523 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 315582
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || || || | ||| ||||| | ||||| || |||
Sbjct 315583 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 315642
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| |||||| ||||| | ||||| || | ||||||||||| ||
Sbjct 315643 TTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 315702
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| ||||| ||||||||
Sbjct 315703 ATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315740
Score = 123 bits (136), Expect = 2e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| || ||||||||| ||||| ||||| || || |||||
Sbjct 315751 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 315810
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || || || | ||| ||||| | ||||| || |||
Sbjct 315811 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 315870
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| |||||| ||||| | ||||| || | ||||||||| | ||
Sbjct 315871 TTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTG 315930
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||| ||||| ||||| |||||||| ||
Sbjct 315931 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 315971
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| || ||||||||| ||||| ||||| || || ||||| | || ||
Sbjct 315304 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 315363
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || || || | ||| ||||| | ||| | || || || || |
Sbjct 315364 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGG 315423
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||||| | ||||| || | ||||||||||| || || || ||
Sbjct 315424 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 315483
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| ||||| ||||| ||||||||
Sbjct 315484 CCGGTCAGGGTCTTCACGAAGATCTGCAT 315512
>seq112392
Length=498
Score = 105 bits (116), Expect = 6e-18
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || || ||| |||||||||||| ||||||||||
Sbjct 121 CCACCGCGGAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATATTATAGTCGGCC 180
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || || ||||| || || || || |||| ||||||||||| | |||
Sbjct 181 AAAGTACGGCCATCCTCCAGCTGTTTTCCAGCAAAGATCAACCGCTGTTGGTCAGGGGGG 240
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812
| | |||||||||| ||| | ||||||| || | | || || ||| |||
Sbjct 241 ATCCCCTCCTTGTCC-TGAATCTTTGCTTTCAC-ATTA-TCAATGGTATCCGAACTCTCA 297
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| || || || || || |||| ||||| || |||||||||||
Sbjct 298 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTAACAAAAATCTGCAT 347
>seq44178
Length=3241816
Score = 105 bits (116), Expect = 6e-18
Identities = 133/180 (74%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746
||||| ||||| ||||| | || || ||||| |||||||| |||||||| ||||| |||
Sbjct 924535 TAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGG 924594
Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCT 41805
|| | || | | ||||||||| ||| |||| |||| || || | |||| ||
Sbjct 924595 TCAGGTGGGATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACT 924653
Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
| ||| ||||| | || || ||||| ||||| || ||||| || || |||||||||||
Sbjct 924654 GGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 924713
>seq41127
Length=7874669
Score = 105 bits (116), Expect = 6e-18
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || |||||||| ||||| ||| ||| ||||| ||||| ||||| ||||| |||||
Sbjct 7357811 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGG 7357870
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||| ||||| || |||||||| ||| ||||| | || | | ||||
Sbjct 7357871 CCATCTTCCAGCTGTTTGCCAGCAAATATCAGATGCTACTGGTCAGGTGGGATACCCTCC 7357930
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823
|||| ||| ||| |||| | || | |||| || | ||| ||||| | |
Sbjct 7357931 TTGTGT-TGAACTTTGGCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGG 7357989
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| ||||| || || || ||||| || || |||||||||||
Sbjct 7357990 GATGGTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCATGTT 7358031
>seq43203
Length=1387722
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| |||| ||| || || || ||||| ||||| ||||| ||| | | || ||
Sbjct 881602 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATCCTCC 881661
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || |||||||| ||||| ||||| | || | | |||||||| | ||
Sbjct 881662 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTG 881720
Query 41774 ATTTTTTGCTTCAACGACGACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830
| |||| |||| | | | || |||| || | ||| ||||| | || || ||
Sbjct 881721 AATTTTGGCTTTGA--AATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTC 881778
Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| || ||||| || || | ||||||
Sbjct 881779 TTGCCCGTGAGGGTCTTCACAAAGAGCTGCAT 881810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461520903254400
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