Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq37 217 2e-51 >seq37 Length=19344684 Score = 217 bits (240), Expect = 2e-51 Identities = 562/851 (66%), Gaps = 8/851 (1%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || || |||||||| || || || || || ||||||||||| || ||||| ||||| Sbjct 211337 TTCTCAAAGAAGTTAGTGTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTC 211396 Query 16754 G-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 || ||||||| | | | |||||||| || | ||| || || ||||| | Sbjct 211397 TCTACTCTGAAAACCCTGCTAA--AACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACT 211454 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | || ||||| ||||| ||| ||||| || || || || || | || || | Sbjct 211455 CAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAG 211514 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGG 16931 | | || || || || ||| || |||| || |||| ||||| | Sbjct 211515 TAAGGAACTCCTGTTCCATCCGAACAGCACTGATAATTATTTCTCTTACTCTCTCCTCTG 211574 Query 16932 ACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGT 16991 | ||| | ||| | ||||| |||||||| || |||||||| || ||||| ||||| | Sbjct 211575 ATGGTTTGTGTACTTGGTGTTTGAACATCAGGCAAGCGAAATCACAGTGTAAACCCTCAT 211634 Query 16992 CTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACC 17051 |||||| ||||||| ||||||||||| | || |||||| |||||||||||| | || Sbjct 211635 CTCTGCCAGTAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCC 211694 Query 17052 AAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTA 17111 | ||||| | || || || ||||||||||| || || || || | ||||| || | Sbjct 211695 AGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAA 211754 Query 17112 ATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTT 17171 |||| | || || || ||||||| | || ||| | |||| || || || | Sbjct 211755 CGTGTTCACCATAGGTAGCCTCTTTGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCT 211814 Query 17172 GCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTC 17229 ||| | ||| ||||||||| || || || | | || ||| | |||| | | || Sbjct 211815 TCTTGACACAAGGCATCGTTTCAATAGCATTGAAGAGAAATTCCC--TTTCGTTGGGATC 211872 Query 17230 GATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTAT 17289 |||| || || || || || || || || ||||| || |||||||| | |||||| || Sbjct 211873 TTTTATGTAAGTGTCAATAAGGAGACTATATATTTCAGAATGTATGTTTTTCATGGCCAT 211932 Query 17290 CTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGC 17349 || || || || || || ||||||| | || |||||||| | ||||| ||| | Sbjct 211933 TTGGAAGCCATAGAAACAGTGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCAC 211992 Query 17350 TAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | ||||| || || ||||| | || || || || || |||| | || || || Sbjct 211993 CAAGTTTTCATTTACTATGCCATAACTTGCTGCAAAGAAAGCCAGAACGTGGGATATAAA 212052 Query 17410 ATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTC 17469 ||| | | || || | || ||||| | | || ||||| | ||||| || Sbjct 212053 GTATCTCCCCTCGGGCTTCAGGGATTCCCAGTGCCAAACGTCCTTGGACAGGTCCACCTC 212112 Query 17470 TTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTG 17529 | || |||||| || ||| | |||| ||||| | | ||| ||||| ||| | Sbjct 212113 CTTGGTGGTCCAGAAGGAGGCCTCCCCCTTCTTATATGTCTGCCAGATATCGGGGTACTC 212172 Query 17530 TATGGGGAATA 17540 |||||||||| Sbjct 212173 GATGGGGAATA 212183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517528223406480