Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq37 230 2e-55
seq132 102 8e-17
seq111 87.8 2e-12
>seq37
Length=19344684
Score = 230 bits (254), Expect = 2e-55
Identities = 498/735 (68%), Gaps = 10/735 (1%)
Strand=Plus/Plus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|| ||||| || || || | || || | || || ||||||||||| ||||| || |
Sbjct 211307 ACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCTTCCAGT 211366
Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019
|| ||||| |||||||| ||||| ||||| || ||||||| || | |||| |
Sbjct 211367 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC-CTGCTAAAACCC-A 211424
Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078
||||| | | ||| ||||| ||||| || || ||||| ||||| ||| ||||||
Sbjct 211425 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 211483
Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138
|| || || || || || | || | || | || | ||||| ||| ||| ||
Sbjct 211484 ATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCA 211543
Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198
|||| || || | ||| || || ||| | || | ||||||| |||||
Sbjct 211544 CTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGAACATC 211603
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
|| || ||||| || || |||| || || ||||||| ||||||| || ||||| ||
Sbjct 211604 AGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTG 211663
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318
| || ||||| |||||||||||| | ||||||||| | ||||| || || ||||||
Sbjct 211664 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 211723
Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378
|| || || || || | ||||| || | |||| | || ||||| ||||| |
Sbjct 211724 AAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTTGTCC 211783
Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438
| || ||| | |||| || || || | || | |||| ||||||||| || ||
Sbjct 211784 CCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCA 211843
Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496
|| | | || ||| | |||| | ||| |||| || || ||||| || | ||| |
Sbjct 211844 TTGAAGAGAAATTCCC--TTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTAT 211901
Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556
| ||||| || |||||||| | ||||| || || || |||||||| || | || || |
Sbjct 211902 ATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTCTG 211961
Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616
|| || ||||| | |||||| ||| ||| ||| ||||| || || || | |||||
Sbjct 211962 TGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACTTG 212021
Query 16617 CAGCAAAAAACGCCA 16631
| ||||| || ||||
Sbjct 212022 CTGCAAAGAAAGCCA 212036
>seq132
Length=5918258
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||||||||| ||||||||||| | |||||||| |||| ||||
Sbjct 980252 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 980193
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| | || || |||| || || |
Sbjct 980192 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 980133
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 980132 CCACCACTCTTTCC 980119
>seq111
Length=7367144
Score = 87.8 bits (96), Expect = 2e-12
Identities = 234/354 (66%), Gaps = 14/354 (4%)
Strand=Plus/Plus
Query 16202 CACGCGAAGTCGCAATGTA----GT----CCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253
|| || ||||| ||||||| || || || || ||||| |||||||| |||||||
Sbjct 4918118 CAAGCAAAGTCACAATGTAAACTGTTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 4918177
Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313
| || | || | ||| || | ||||||| | ||||||||| | ||||| || || |
Sbjct 4918178 ATGTGAGGCCAGACATCAGTCATTGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 4918237
Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT 16373
|| |||| | || || || | ||||| || | ||||| || ||||||||||
Sbjct 4918238 AAGAGAAGGTGCCTTCTACTGTGGCAAAGGCTGCAACACGTTCTCTGTGGGTAGCATCTT 4918297
Query 16374 TATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTA 16433
| || |||||| | |||| || || | | || | |||| |||| |||| |
Sbjct 4918298 TGTTCACAATCCAACACAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATCCTTTCGA 4918357
Query 16434 TGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491
|||| || | | || ||| | |||| | | || || | | || ||| | | |
Sbjct 4918358 TGGCGTTGAAGAGAAATTCCC--TTTCTTTGTTGTC--TTTAACATGTGTCAGTAAAGAG 4918413
Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545
| | | ||| || || | |||||| || || || || || || |||||||||||
Sbjct 4918414 ATTATCCATGTCAGAATATATGTTTTCCATAGCAATTTGGAAGCCATAGAAGCA 4918467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511397229261520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |