Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq37 230 2e-55 seq132 102 8e-17 seq111 87.8 2e-12 >seq37 Length=19344684 Score = 230 bits (254), Expect = 2e-55 Identities = 498/735 (68%), Gaps = 10/735 (1%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || | || || | || || ||||||||||| ||||| || | Sbjct 211307 ACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCTTCCAGT 211366 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| ||||| || ||||||| || | |||| | Sbjct 211367 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC-CTGCTAAAACCC-A 211424 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 ||||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 211425 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 211483 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || || || || | || | || | || | ||||| ||| ||| || Sbjct 211484 ATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCA 211543 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 |||| || || | ||| || || ||| | || | ||||||| ||||| Sbjct 211544 CTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGAACATC 211603 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || ||||| || || |||| || || ||||||| ||||||| || ||||| || Sbjct 211604 AGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTG 211663 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | ||||||||| | ||||| || || |||||| Sbjct 211664 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 211723 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || || || | ||||| || | |||| | || ||||| ||||| | Sbjct 211724 AAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTTGTCC 211783 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | || ||| | |||| || || || | || | |||| ||||||||| || || Sbjct 211784 CCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCA 211843 Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || | | || ||| | |||| | ||| |||| || || ||||| || | ||| | Sbjct 211844 TTGAAGAGAAATTCCC--TTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTAT 211901 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 | ||||| || |||||||| | ||||| || || || |||||||| || | || || | Sbjct 211902 ATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTCTG 211961 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 || || ||||| | |||||| ||| ||| ||| ||||| || || || | ||||| Sbjct 211962 TGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACTTG 212021 Query 16617 CAGCAAAAAACGCCA 16631 | ||||| || |||| Sbjct 212022 CTGCAAAGAAAGCCA 212036 >seq132 Length=5918258 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||||||||| ||||||||||| | |||||||| |||| |||| Sbjct 980252 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 980193 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| || || | Sbjct 980192 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 980133 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 980132 CCACCACTCTTTCC 980119 >seq111 Length=7367144 Score = 87.8 bits (96), Expect = 2e-12 Identities = 234/354 (66%), Gaps = 14/354 (4%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTA----GT----CCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 || || ||||| ||||||| || || || || ||||| |||||||| ||||||| Sbjct 4918118 CAAGCAAAGTCACAATGTAAACTGTTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 4918177 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | || | || | ||| || | ||||||| | ||||||||| | ||||| || || | Sbjct 4918178 ATGTGAGGCCAGACATCAGTCATTGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 4918237 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT 16373 || |||| | || || || | ||||| || | ||||| || |||||||||| Sbjct 4918238 AAGAGAAGGTGCCTTCTACTGTGGCAAAGGCTGCAACACGTTCTCTGTGGGTAGCATCTT 4918297 Query 16374 TATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTA 16433 | || |||||| | |||| || || | | || | |||| |||| |||| | Sbjct 4918298 TGTTCACAATCCAACACAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATCCTTTCGA 4918357 Query 16434 TGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 |||| || | | || ||| | |||| | | || || | | || ||| | | | Sbjct 4918358 TGGCGTTGAAGAGAAATTCCC--TTTCTTTGTTGTC--TTTAACATGTGTCAGTAAAGAG 4918413 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 | | | ||| || || | |||||| || || || || || || ||||||||||| Sbjct 4918414 ATTATCCATGTCAGAATATATGTTTTCCATAGCAATTTGGAAGCCATAGAAGCA 4918467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511397229261520