Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq22 141 7e-29 >seq22 Length=27210278 Score = 141 bits (156), Expect = 7e-29 Identities = 275/404 (68%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 18944 GTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCA 19003 |||||||||||||| |||| | || | |||| | || ||||| || | | || || Sbjct 26912851 GTCTTGGAATCCAAGGGATCTTCCTCTGATGGCGTTGCCCCCATGCCATGCCCTCTGCCA 26912792 Query 19004 GTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGG 19063 ||| ||||| | ||| |||| | ||||| || | ||||||||||| | || |||| Sbjct 26912791 GTTCTACGTGGTGAACAGTGAGCTGTCCTGTCAGCTGTACCAGAGATCAAGAGACGTGGG 26912732 Query 19064 CCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGT 19123 ||| || | || |||||||| | | || || || || || ||||| | ||| | Sbjct 26912731 CCTAGGTATGCCTTTCAACATCACCAGCTACGCCCTGCTCACGTACATGATCATGCACAT 26912672 Query 19124 TACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAA 19183 || || || || | || ||||| | ||| | |||| ||||||||||||||| |||| Sbjct 26912671 CACGGGCCTGAAGCCAGGTGATTTTGTACATGCTTTGGGAGATGCACATATTTACCTGAA 26912612 Query 19184 TCATATAGATGCTTTAAAAGTGCAGCT--AGCTCGATCCCCAAAACCTTTTCCTTGCCTT 19241 ||| || || | | ||| | ||||| || || | | | |||||| || || Sbjct 26912611 TCACATCGAGCCACTGAAAATTCAGCTTCAGTGAGAACGC--AGACCTTTCCCAAAGCTC 26912554 Query 19242 AAAATTATTCGAAATGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGAT 19301 || ||| ||||||| || | || | ||||| ||| || || ||| || |||| Sbjct 26912553 AAGATTCTTCGAAAAGTTGAGAAAATTGATGACTTCAAAGCTGAAGACTTTAAGGTTGAA 26912494 Query 19302 GGATATAATCCACAccccccccTAAAAATGGAAATGGCTCTTTA 19345 || || |||| ||||| | | ||||||||||||||| |||| Sbjct 26912493 GGGTACAATCTGCACCCAACTATTAAAATGGAAATGGCTGTTTA 26912450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399490921986870