Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq134 118 9e-22 seq38 118 9e-22 seq52 113 4e-20 seq102 104 2e-17 seq101 100 2e-16 seq54 93.3 4e-14 seq218 89.7 4e-13 seq85 87.8 2e-12 seq4 87.8 2e-12 seq63 82.4 7e-11 >seq134 Length=5851302 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 3733157 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 3733216 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 3733217 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3733276 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 3733277 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 3733336 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||||||||| ||||||||||| | ||||| Sbjct 3733337 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 3733371 >seq38 Length=19171412 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 14820745 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 14820686 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 14820685 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 14820626 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 14820625 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 14820566 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||||||||| ||||||||||| | ||||| Sbjct 14820565 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 14820531 >seq52 Length=16356641 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 10618873 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 10618932 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || ||||| ||||| | || || Sbjct 10618933 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAG 10618992 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 10618993 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 10619052 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTAC 29175 || ||||||||||| ||||||||||| | ||||||| Sbjct 10619053 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTAC 10619089 >seq102 Length=8035806 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| |||| |||||| Sbjct 179381 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAAGTTGAACCC 179440 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| | | | | || | ||| | ||| ||||| ||| | | || ||| Sbjct 179441 TCAGATAAGATAGAAAATGTAAAGGCCACAATCCATGATAAGGAAAGAATTCCTCCTGAT 179500 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| | || ||| Sbjct 179501 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTAC 179556 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||| ||||| |||||| ||||||| Sbjct 179557 AACATTCAAAAGGAGTCTACACTTCACCTGGTGTT 179591 >seq101 Length=8127303 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | | ||| || || || ||| ||| |||| | Sbjct 4242109 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACTATCACCCTCGAGGATGAACTC 4242050 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| | | | || | ||| || || ||||||||||| | || ||| Sbjct 4242049 TCAGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 4241990 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| ||||||||||||| ||| || | || || Sbjct 4241989 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATTGTTGTACTTTGTCTGACTAT 4241930 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||| ||||||||||| | ||||| Sbjct 4241929 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 4241895 >seq54 Length=16265076 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 28960 AAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCG 29019 ||| ||| || || | ||||| | || || || ||||| ||| ||| | |||||| Sbjct 5607227 AAAAGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGCTGAACCCT 5607168 Query 29020 CAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 29079 | || || | || | ||| || ||| ||||| ||||| | || |||| Sbjct 5607167 CGGATACTACAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATC 5607108 Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 | |||||||| |||||||| ||||| |||||||||||| | | || | || |||| Sbjct 5607107 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTATTTTGTCTGACTACA 5607048 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 | ||||||||||| ||||||||||| | ||||| Sbjct 5607047 ACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 5607014 >seq218 Length=888862 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| |||||||| |||||||| ||||| ||||||||| Sbjct 683807 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 683748 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| ||| || | || ||||| ||||||||| | ||||||||||| | ||||| Sbjct 683747 GATGGATGTACTTTGTCTGACTACAACATTCAGAAGAAGTCTACTCTTCATCTTGTGTT 683689 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | | ||| || ||||| ||| || |||||| Sbjct 160792 AAAATGCAGATTTTCGTGAAAACCCTTAAGGGGAAGACCATCACCCTTGAGGTTGAACCC 160733 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || | | | | || | ||| || || ||||| ||||| | || ||| Sbjct 160732 TCGGATAGGATAGAAAATGTAAAGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 160673 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||||||| |||||||| ||||| ||||||||||| ||| || | || ||| Sbjct 160672 CAGCAAAGAC--ATCTTTGCTGGCAAGCAACTGGAAGAGGGACGTACTTTGTCTGACTAC 160615 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||||||||| ||||||||||| | ||||| Sbjct 160614 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 160580 >seq85 Length=9676098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | || || || ||||| ||| ||| |||||| Sbjct 5982426 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 5982485 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | || | ||| || || ||||| ||||| | || ||| Sbjct 5982486 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 5982545 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAA---ACTATGGCCGAT 29135 || ||||||| |||||||| ||||| |||||||||| || | ||| || | || Sbjct 5982546 CAGCAAAGACGGATCTTTGCTGGCAAGTAACTGGAAGA---CAGACGTACTTTGTCTGAC 5982602 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| ||||| ||||| ||||||||||| | ||||| Sbjct 5982603 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 5982640 >seq4 Length=54856640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | |||| | ||||| || || || || ||| | |||||| Sbjct 17517507 AAAATGCAGATTTTCGTGAAAATCCTTACGGGGAAGACTATCACTCTCGAGGCTGAACCC 17517566 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || ||| | |||| | || ||| Sbjct 17517567 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATGAGGAAGAAATTCCTCCTGAT 17517626 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||| ||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 17517627 CAGCAAACACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 17517686 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 || ||||||||||| ||||||||||| Sbjct 17517687 AACATTCAGAAGGAGTCTACTCTTCA 17517712 >seq63 Length=13147851 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| |||||||| |||||||| ||||| ||||||||| Sbjct 9542390 GATAAGGAAGGAATCCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 9542331 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTT 29162 ||| ||| || | || ||||| ||||| ||||| ||||||||| Sbjct 9542330 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTT 9542283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428321978153330