Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq134 118 9e-22
seq38 118 9e-22
seq52 113 4e-20
seq102 104 2e-17
seq101 100 2e-16
seq54 93.3 4e-14
seq218 89.7 4e-13
seq85 87.8 2e-12
seq4 87.8 2e-12
seq63 82.4 7e-11
>seq134
Length=5851302
Score = 118 bits (130), Expect = 9e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 3733157 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 3733216
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|||| ||| | | || | ||| || || ||||| ||||| | || |||
Sbjct 3733217 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3733276
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| |||||||| |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 3733277 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 3733336
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||||||||| ||||||||||| | |||||
Sbjct 3733337 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 3733371
>seq38
Length=19171412
Score = 118 bits (130), Expect = 9e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 14820745 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 14820686
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|||| ||| | | || | ||| || || ||||| ||||| | || |||
Sbjct 14820685 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 14820626
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| |||||||| |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 14820625 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 14820566
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||||||||| ||||||||||| | |||||
Sbjct 14820565 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 14820531
>seq52
Length=16356641
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 10618873 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 10618932
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || ||| | | || | ||| || || ||||| ||||| | || ||
Sbjct 10618933 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAG 10618992
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| |||||||| |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 10618993 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 10619052
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTAC 29175
|| ||||||||||| ||||||||||| | |||||||
Sbjct 10619053 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTAC 10619089
>seq102
Length=8035806
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| |||| ||||||
Sbjct 179381 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAAGTTGAACCC 179440
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|||| | | | | || | ||| | ||| ||||| ||| | | || |||
Sbjct 179441 TCAGATAAGATAGAAAATGTAAAGGCCACAATCCATGATAAGGAAAGAATTCCTCCTGAT 179500
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| |||||||| |||||||| ||||| |||||||||||| ||| | || |||
Sbjct 179501 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTAC 179556
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||| ||||| ||||| |||||| |||||||
Sbjct 179557 AACATTCAAAAGGAGTCTACACTTCACCTGGTGTT 179591
>seq101
Length=8127303
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||||| ||||| | | ||| || || || ||| ||| |||| |
Sbjct 4242109 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACTATCACCCTCGAGGATGAACTC 4242050
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|||| | | | || | ||| || || ||||||||||| | || |||
Sbjct 4242049 TCAGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 4241990
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| |||||||| |||||||| ||||| ||||||||||||| ||| || | || ||
Sbjct 4241989 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATTGTTGTACTTTGTCTGACTAT 4241930
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||| ||||| ||||||||||| | |||||
Sbjct 4241929 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 4241895
>seq54
Length=16265076
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 28960 AAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCG 29019
||| ||| || || | ||||| | || || || ||||| ||| ||| | ||||||
Sbjct 5607227 AAAAGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGCTGAACCCT 5607168
Query 29020 CAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 29079
| || || | || | ||| || ||| ||||| ||||| | || ||||
Sbjct 5607167 CGGATACTACAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATC 5607108
Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139
| |||||||| |||||||| ||||| |||||||||||| | | || | || ||||
Sbjct 5607107 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTATTTTGTCTGACTACA 5607048
Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
| ||||||||||| ||||||||||| | |||||
Sbjct 5607047 ACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 5607014
>seq218
Length=888862
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| ||||| | || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 683807 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 683748
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
||| ||| || | || ||||| ||||||||| | ||||||||||| | |||||
Sbjct 683747 GATGGATGTACTTTGTCTGACTACAACATTCAGAAGAAGTCTACTCTTCATCTTGTGTT 683689
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/215 (69%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | | ||| || ||||| ||| || ||||||
Sbjct 160792 AAAATGCAGATTTTCGTGAAAACCCTTAAGGGGAAGACCATCACCCTTGAGGTTGAACCC 160733
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || | | | | || | ||| || || ||||| ||||| | || |||
Sbjct 160732 TCGGATAGGATAGAAAATGTAAAGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 160673
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| ||||||| |||||||| ||||| ||||||||||| ||| || | || |||
Sbjct 160672 CAGCAAAGAC--ATCTTTGCTGGCAAGCAACTGGAAGAGGGACGTACTTTGTCTGACTAC 160615
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||||||||| ||||||||||| | |||||
Sbjct 160614 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 160580
>seq85
Length=9676098
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | || || || ||||| ||| ||| ||||||
Sbjct 5982426 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 5982485
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || ||| | || | ||| || || ||||| ||||| | || |||
Sbjct 5982486 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 5982545
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAA---ACTATGGCCGAT 29135
|| ||||||| |||||||| ||||| |||||||||| || | ||| || | ||
Sbjct 5982546 CAGCAAAGACGGATCTTTGCTGGCAAGTAACTGGAAGA---CAGACGTACTTTGTCTGAC 5982602
Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
||||| ||||| ||||| ||||||||||| | |||||
Sbjct 5982603 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 5982640
>seq4
Length=54856640
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | |||| | ||||| || || || || ||| | ||||||
Sbjct 17517507 AAAATGCAGATTTTCGTGAAAATCCTTACGGGGAAGACTATCACTCTCGAGGCTGAACCC 17517566
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || ||| | | || | ||| || || ||| | |||| | || |||
Sbjct 17517567 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATGAGGAAGAAATTCCTCCTGAT 17517626
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| |||| ||| |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 17517627 CAGCAAACACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 17517686
Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164
|| ||||||||||| |||||||||||
Sbjct 17517687 AACATTCAGAAGGAGTCTACTCTTCA 17517712
>seq63
Length=13147851
Score = 82.4 bits (90), Expect = 7e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| ||||| | || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 9542390 GATAAGGAAGGAATCCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 9542331
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTT 29162
||| ||| || | || ||||| ||||| ||||| |||||||||
Sbjct 9542330 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTT 9542283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428321978153330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |