Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq18 279 6e-70
seq22 172 6e-38
seq38 165 1e-35
seq12 165 1e-35
>seq18
Length=30262601
Score = 279 bits (308), Expect = 6e-70
Identities = 608/896 (68%), Gaps = 21/896 (2%)
Strand=Plus/Plus
Query 9478 CTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTC 9537
|||||| || ||||| || | || | ||||||||| | || ||| || | || ||
Sbjct 8917285 CTGTATTCCCTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGTTGGTGATCCTC 8917344
Query 9538 ATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCT 9597
|||| ||||| || | || || ||||| || || | ||| | ||| |||| || ||
Sbjct 8917345 ATAAAATACAAGAGGCTCCGAATTCTCACCAATATCTACCTGCTCAACCTGGCCATTTCC 8917404
Query 9598 GACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGAT 9657
||| |||| || || || || | ||||| ||||| |||||||| |||| |||
Sbjct 8917405 GACCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCACTATATC---ATGTGGAGTGAC 8917461
Query 9658 TGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTAC 9717
||| |||||| | | ||||||| | || ||| | | || || | |||||
Sbjct 8917462 TGGGTTTTTGGCCATGGCATGTGTAAGGTCGTCTCGGGGTTTTATTTCACGGGCTTGTAC 8917521
Query 9718 AGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCT 9777
| || |||||| |||||||||||| || | |||||||| || || ||||| |||||
Sbjct 8917522 GGAGAGATCTTTTTCATCATCCTGCTGACGATCGACAGGTACCTGGCCATTGTCCATGCT 8917581
Query 9778 GTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCT 9835
|| ||| || ||| | || || || | ||| | | ||| | | ||||
Sbjct 8917582 GTGTTTGCCCTTCGAGCCC--GCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACCT 8917639
Query 9836 GGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACA 9895
|| ||||||| | | | |||||||||||| |||| || ||| ||| | | ||
Sbjct 8917640 GGGGCCTGGCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCA-GGAGACCGAAA--ACG 8917696
Query 9896 ATGGT--AGGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCT-ACAAATGTTTGGAG 9950
| | ||||| | | || | ||| ||||||||| ||| ||||| | |||
Sbjct 8917697 TTCTTCAAGGGTCTTATTGCAACCCTGTGTACCCAGAGGATGGAGCACAAAGCT--GGAA 8917754
Query 9951 GCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGC 10010
|| | | | | | || | | || |||| | | ||||||||| |||||||
Sbjct 8917755 GCATTTCTATGCTCTGAGAGTAAACGTCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGC 8917814
Query 10011 TGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAA 10070
|||||||| | ||| |||| || |||| ||||| |||||| || || ||||||||
Sbjct 8917815 CATCTGCTACGCAGGAATCATCAAAACACTGCTGAGGTGCCCCAATAAAAAAAAGTACAA 8917874
Query 10071 GGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAA 10130
||||||| ||||||| |||||||||||||||| | ||| |||| ||||||||||||||
Sbjct 8917875 GGCCATCCGGCTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAA 8917934
Query 10131 CATTGTTCTCCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTG 10188
| | | |||||| || | ||||||||| || ||| | | | | || | || ||| |
Sbjct 8917935 CCTGGCTCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--G 8917992
Query 10189 AGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGC 10248
|||| | ||||| |||| || ||| | ||| | | |||||| | ||||| |||
Sbjct 8917993 AGCAAGGATCTGGACCTGGCCCTACTGGTGACACAGGTGATCGCCTACTCCCACTGCTGC 8918052
Query 10249 ATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTC 10308
| ||||| ||||||||||| || || || |||| ||| | | ||||| |||||||
Sbjct 8918053 GTTAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCCGGAAGTACCTGCGCCACTTC 8918112
Query 10309 TTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364
||| ||| ||||| | | ||| | |||| |||||||| ||||| || ||||
Sbjct 8918113 TTCTACAGGCACGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTTCCTAGTGA 8918168
Score = 279 bits (308), Expect = 6e-70
Identities = 608/896 (68%), Gaps = 21/896 (2%)
Strand=Plus/Plus
Query 176364 CTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTC 176423
|||||| || ||||| || | || | ||||||||| | || ||| || | || ||
Sbjct 8917285 CTGTATTCCCTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGTTGGTGATCCTC 8917344
Query 176424 ATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCT 176483
|||| ||||| || | || || ||||| || || | ||| | ||| |||| || ||
Sbjct 8917345 ATAAAATACAAGAGGCTCCGAATTCTCACCAATATCTACCTGCTCAACCTGGCCATTTCC 8917404
Query 176484 GACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGAT 176543
||| |||| || || || || | ||||| ||||| |||||||| |||| |||
Sbjct 8917405 GACCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCACTATATC---ATGTGGAGTGAC 8917461
Query 176544 TGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTAC 176603
||| |||||| | | ||||||| | || ||| | | || || | |||||
Sbjct 8917462 TGGGTTTTTGGCCATGGCATGTGTAAGGTCGTCTCGGGGTTTTATTTCACGGGCTTGTAC 8917521
Query 176604 AGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCT 176663
| || |||||| |||||||||||| || | |||||||| || || ||||| |||||
Sbjct 8917522 GGAGAGATCTTTTTCATCATCCTGCTGACGATCGACAGGTACCTGGCCATTGTCCATGCT 8917581
Query 176664 GTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCT 176721
|| ||| || ||| | || || || | ||| | | ||| | | ||||
Sbjct 8917582 GTGTTTGCCCTTCGAGCCC--GCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACCT 8917639
Query 176722 GGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACA 176781
|| ||||||| | | | |||||||||||| |||| || ||| ||| | | ||
Sbjct 8917640 GGGGCCTGGCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCA-GGAGACCGAAA--ACG 8917696
Query 176782 ATGGT--AGGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCT-ACAAATGTTTGGAG 176836
| | ||||| | | || | ||| ||||||||| ||| ||||| | |||
Sbjct 8917697 TTCTTCAAGGGTCTTATTGCAACCCTGTGTACCCAGAGGATGGAGCACAAAGCT--GGAA 8917754
Query 176837 GCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGC 176896
|| | | | | | || | | || |||| | | ||||||||| |||||||
Sbjct 8917755 GCATTTCTATGCTCTGAGAGTAAACGTCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGC 8917814
Query 176897 TGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAA 176956
|||||||| | ||| |||| || |||| ||||| |||||| || || ||||||||
Sbjct 8917815 CATCTGCTACGCAGGAATCATCAAAACACTGCTGAGGTGCCCCAATAAAAAAAAGTACAA 8917874
Query 176957 GGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAA 177016
||||||| ||||||| |||||||||||||||| | ||| |||| ||||||||||||||
Sbjct 8917875 GGCCATCCGGCTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAA 8917934
Query 177017 CATTGTTCTCCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTG 177074
| | | |||||| || | ||||||||| || ||| | | | | || | || ||| |
Sbjct 8917935 CCTGGCTCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--G 8917992
Query 177075 AGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGC 177134
|||| | ||||| |||| || ||| | ||| | | |||||| | ||||| |||
Sbjct 8917993 AGCAAGGATCTGGACCTGGCCCTACTGGTGACACAGGTGATCGCCTACTCCCACTGCTGC 8918052
Query 177135 ATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTC 177194
| ||||| ||||||||||| || || || |||| ||| | | ||||| |||||||
Sbjct 8918053 GTTAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCCGGAAGTACCTGCGCCACTTC 8918112
Query 177195 TTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250
||| ||| ||||| | | ||| | |||| |||||||| ||||| || ||||
Sbjct 8918113 TTCTACAGGCACGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTTCCTAGTGA 8918168
>seq22
Length=27210278
Score = 172 bits (190), Expect = 6e-38
Identities = 266/376 (71%), Gaps = 4/376 (1%)
Strand=Plus/Plus
Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596
|| || ||||| ||||| || | | ||| | | ||| || || | | ||||||
Sbjct 26912450 TAAACAGCCATTTCCATTTTAATAGTTGGGTGCAGATTGTACCCTTCAACCTTAAAGTCT 26912509
Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GGGAAAGGG 145655
|| || |||||||||| || | ||| || | || ||| ||||| | ||||||||
Sbjct 26912510 TCAGCTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAAGGT 26912569
Query 145656 CCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCG 145714
| | | ||| ||| ||||| | ||||| ||||| | ||| || ||||| | || |
Sbjct 26912570 CTGCGTTCTCACTGA--AGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTG 26912627
Query 145715 CGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGT 145774
| || |||| | || | || || || |||| |||||||||| ||| || |||||
Sbjct 26912628 CATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGATCATGT 26912687
Query 145775 AGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGC 145834
| || ||||||| |||||||| |||||||| |||| || || |||| ||| | || |
Sbjct 26912688 ACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCTTGATC 26912747
Query 145835 GCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGC 145894
|||||||||||| ||||| ||||| | | | |||||||||||||||| ||| ||||
Sbjct 26912748 TCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGAGGGCATGGC 26912807
Query 145895 AGGGCGGCAGGGCCAT 145910
| || |||| |||||
Sbjct 26912808 ATGGGGGCAACGCCAT 26912823
>seq38
Length=19171412
Score = 165 bits (182), Expect = 1e-35
Identities = 131/157 (83%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||| | |||||||| ||||| || || ||||||||||||||||||||||| | |||
Sbjct 18494318 CAGCGTCGCAGCCTCAGCCTGAAAGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGCTCC 18494259
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| ||| | | |||||||| || ||||||||||||||||||||||||||||||
Sbjct 18494258 TTGAT---GTCTGGGTCATGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 18494202
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
||||||||||||| ||| ||||| |||||||||||||
Sbjct 18494201 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 18494165
Score = 109 bits (120), Expect = 6e-19
Identities = 81/95 (85%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981
|||||| | | |||| | ||||||||||| |||||||||| |||||||||||||||||
Sbjct 18496590 TCAGTTCTGCGTCTTCATTGTCATGTAGGCTTCTATGTAGTCGATGAAGATGTCAAACTC 18496531
Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
|||||||| |||||||| ||||| || |||||||
Sbjct 18496530 ACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 18496496
>seq12
Length=39782659
Score = 165 bits (182), Expect = 1e-35
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
|||||||||| ||| |||| |||||| || ||||||| ||||||||| |||||||| |||
Sbjct 25689306 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 25689247
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| || || |||||||| || || | ||| |||||||||||||| ||||| ||| | ||
Sbjct 25689246 ACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 25689187
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|||||||||||||| ||| ||||| || ||||| |||||
Sbjct 25689186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 25689146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590056988171440
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