Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq18 279 6e-70 seq22 172 6e-38 seq38 165 1e-35 seq12 165 1e-35 >seq18 Length=30262601 Score = 279 bits (308), Expect = 6e-70 Identities = 608/896 (68%), Gaps = 21/896 (2%) Strand=Plus/Plus Query 9478 CTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTC 9537 |||||| || ||||| || | || | ||||||||| | || ||| || | || || Sbjct 8917285 CTGTATTCCCTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGTTGGTGATCCTC 8917344 Query 9538 ATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCT 9597 |||| ||||| || | || || ||||| || || | ||| | ||| |||| || || Sbjct 8917345 ATAAAATACAAGAGGCTCCGAATTCTCACCAATATCTACCTGCTCAACCTGGCCATTTCC 8917404 Query 9598 GACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGAT 9657 ||| |||| || || || || | ||||| ||||| |||||||| |||| ||| Sbjct 8917405 GACCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCACTATATC---ATGTGGAGTGAC 8917461 Query 9658 TGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTAC 9717 ||| |||||| | | ||||||| | || ||| | | || || | ||||| Sbjct 8917462 TGGGTTTTTGGCCATGGCATGTGTAAGGTCGTCTCGGGGTTTTATTTCACGGGCTTGTAC 8917521 Query 9718 AGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCT 9777 | || |||||| |||||||||||| || | |||||||| || || ||||| ||||| Sbjct 8917522 GGAGAGATCTTTTTCATCATCCTGCTGACGATCGACAGGTACCTGGCCATTGTCCATGCT 8917581 Query 9778 GTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCT 9835 || ||| || ||| | || || || | ||| | | ||| | | |||| Sbjct 8917582 GTGTTTGCCCTTCGAGCCC--GCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACCT 8917639 Query 9836 GGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACA 9895 || ||||||| | | | |||||||||||| |||| || ||| ||| | | || Sbjct 8917640 GGGGCCTGGCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCA-GGAGACCGAAA--ACG 8917696 Query 9896 ATGGT--AGGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCT-ACAAATGTTTGGAG 9950 | | ||||| | | || | ||| ||||||||| ||| ||||| | ||| Sbjct 8917697 TTCTTCAAGGGTCTTATTGCAACCCTGTGTACCCAGAGGATGGAGCACAAAGCT--GGAA 8917754 Query 9951 GCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGC 10010 || | | | | | || | | || |||| | | ||||||||| ||||||| Sbjct 8917755 GCATTTCTATGCTCTGAGAGTAAACGTCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGC 8917814 Query 10011 TGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAA 10070 |||||||| | ||| |||| || |||| ||||| |||||| || || |||||||| Sbjct 8917815 CATCTGCTACGCAGGAATCATCAAAACACTGCTGAGGTGCCCCAATAAAAAAAAGTACAA 8917874 Query 10071 GGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAA 10130 ||||||| ||||||| |||||||||||||||| | ||| |||| |||||||||||||| Sbjct 8917875 GGCCATCCGGCTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAA 8917934 Query 10131 CATTGTTCTCCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTG 10188 | | | |||||| || | ||||||||| || ||| | | | | || | || ||| | Sbjct 8917935 CCTGGCTCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--G 8917992 Query 10189 AGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGC 10248 |||| | ||||| |||| || ||| | ||| | | |||||| | ||||| ||| Sbjct 8917993 AGCAAGGATCTGGACCTGGCCCTACTGGTGACACAGGTGATCGCCTACTCCCACTGCTGC 8918052 Query 10249 ATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTC 10308 | ||||| ||||||||||| || || || |||| ||| | | ||||| ||||||| Sbjct 8918053 GTTAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCCGGAAGTACCTGCGCCACTTC 8918112 Query 10309 TTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364 ||| ||| ||||| | | ||| | |||| |||||||| ||||| || |||| Sbjct 8918113 TTCTACAGGCACGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTTCCTAGTGA 8918168 Score = 279 bits (308), Expect = 6e-70 Identities = 608/896 (68%), Gaps = 21/896 (2%) Strand=Plus/Plus Query 176364 CTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTC 176423 |||||| || ||||| || | || | ||||||||| | || ||| || | || || Sbjct 8917285 CTGTATTCCCTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGTTGGTGATCCTC 8917344 Query 176424 ATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCT 176483 |||| ||||| || | || || ||||| || || | ||| | ||| |||| || || Sbjct 8917345 ATAAAATACAAGAGGCTCCGAATTCTCACCAATATCTACCTGCTCAACCTGGCCATTTCC 8917404 Query 176484 GACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGAT 176543 ||| |||| || || || || | ||||| ||||| |||||||| |||| ||| Sbjct 8917405 GACCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCACTATATC---ATGTGGAGTGAC 8917461 Query 176544 TGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTAC 176603 ||| |||||| | | ||||||| | || ||| | | || || | ||||| Sbjct 8917462 TGGGTTTTTGGCCATGGCATGTGTAAGGTCGTCTCGGGGTTTTATTTCACGGGCTTGTAC 8917521 Query 176604 AGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCT 176663 | || |||||| |||||||||||| || | |||||||| || || ||||| ||||| Sbjct 8917522 GGAGAGATCTTTTTCATCATCCTGCTGACGATCGACAGGTACCTGGCCATTGTCCATGCT 8917581 Query 176664 GTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCT 176721 || ||| || ||| | || || || | ||| | | ||| | | |||| Sbjct 8917582 GTGTTTGCCCTTCGAGCCC--GCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACCT 8917639 Query 176722 GGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACA 176781 || ||||||| | | | |||||||||||| |||| || ||| ||| | | || Sbjct 8917640 GGGGCCTGGCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCA-GGAGACCGAAA--ACG 8917696 Query 176782 ATGGT--AGGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCT-ACAAATGTTTGGAG 176836 | | ||||| | | || | ||| ||||||||| ||| ||||| | ||| Sbjct 8917697 TTCTTCAAGGGTCTTATTGCAACCCTGTGTACCCAGAGGATGGAGCACAAAGCT--GGAA 8917754 Query 176837 GCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGC 176896 || | | | | | || | | || |||| | | ||||||||| ||||||| Sbjct 8917755 GCATTTCTATGCTCTGAGAGTAAACGTCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGC 8917814 Query 176897 TGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAA 176956 |||||||| | ||| |||| || |||| ||||| |||||| || || |||||||| Sbjct 8917815 CATCTGCTACGCAGGAATCATCAAAACACTGCTGAGGTGCCCCAATAAAAAAAAGTACAA 8917874 Query 176957 GGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAA 177016 ||||||| ||||||| |||||||||||||||| | ||| |||| |||||||||||||| Sbjct 8917875 GGCCATCCGGCTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAA 8917934 Query 177017 CATTGTTCTCCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTG 177074 | | | |||||| || | ||||||||| || ||| | | | | || | || ||| | Sbjct 8917935 CCTGGCTCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--G 8917992 Query 177075 AGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGC 177134 |||| | ||||| |||| || ||| | ||| | | |||||| | ||||| ||| Sbjct 8917993 AGCAAGGATCTGGACCTGGCCCTACTGGTGACACAGGTGATCGCCTACTCCCACTGCTGC 8918052 Query 177135 ATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTC 177194 | ||||| ||||||||||| || || || |||| ||| | | ||||| ||||||| Sbjct 8918053 GTTAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCCGGAAGTACCTGCGCCACTTC 8918112 Query 177195 TTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250 ||| ||| ||||| | | ||| | |||| |||||||| ||||| || |||| Sbjct 8918113 TTCTACAGGCACGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTTCCTAGTGA 8918168 >seq22 Length=27210278 Score = 172 bits (190), Expect = 6e-38 Identities = 266/376 (71%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || ||||| ||||| || | | ||| | | ||| || || | | |||||| Sbjct 26912450 TAAACAGCCATTTCCATTTTAATAGTTGGGTGCAGATTGTACCCTTCAACCTTAAAGTCT 26912509 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GGGAAAGGG 145655 || || |||||||||| || | ||| || | || ||| ||||| | |||||||| Sbjct 26912510 TCAGCTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAAGGT 26912569 Query 145656 CCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCG 145714 | | | ||| ||| ||||| | ||||| ||||| | ||| || ||||| | || | Sbjct 26912570 CTGCGTTCTCACTGA--AGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTG 26912627 Query 145715 CGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGT 145774 | || |||| | || | || || || |||| |||||||||| ||| || ||||| Sbjct 26912628 CATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGATCATGT 26912687 Query 145775 AGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGC 145834 | || ||||||| |||||||| |||||||| |||| || || |||| ||| | || | Sbjct 26912688 ACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCTTGATC 26912747 Query 145835 GCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGC 145894 |||||||||||| ||||| ||||| | | | |||||||||||||||| ||| |||| Sbjct 26912748 TCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGAGGGCATGGC 26912807 Query 145895 AGGGCGGCAGGGCCAT 145910 | || |||| ||||| Sbjct 26912808 ATGGGGGCAACGCCAT 26912823 >seq38 Length=19171412 Score = 165 bits (182), Expect = 1e-35 Identities = 131/157 (83%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | |||||||| ||||| || || ||||||||||||||||||||||| | ||| Sbjct 18494318 CAGCGTCGCAGCCTCAGCCTGAAAGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGCTCC 18494259 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | |||||||| || |||||||||||||||||||||||||||||| Sbjct 18494258 TTGAT---GTCTGGGTCATGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 18494202 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 18494201 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 18494165 Score = 109 bits (120), Expect = 6e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||||| | | |||| | ||||||||||| |||||||||| ||||||||||||||||| Sbjct 18496590 TCAGTTCTGCGTCTTCATTGTCATGTAGGCTTCTATGTAGTCGATGAAGATGTCAAACTC 18496531 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||||| || ||||||| Sbjct 18496530 ACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 18496496 >seq12 Length=39782659 Score = 165 bits (182), Expect = 1e-35 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| |||| |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 25689306 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 25689247 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| || || | ||| |||||||||||||| ||||| ||| | || Sbjct 25689246 ACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 25689187 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||||| || ||||| ||||| Sbjct 25689186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 25689146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590056988171440