Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq15 437 1e-117 seq48 340 2e-88 seq86 306 4e-78 seq8 306 4e-78 seq80 120 4e-22 seq59 120 4e-22 seq78 93.3 5e-14 >seq15 Length=36383700 Score = 437 bits (484), Expect = 1e-117 Identities = 425/543 (78%), Gaps = 4/543 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| | |||||| ||||| | | | ||||||| ||||| |||||||||||||| Sbjct 21099886 AGCAGGGCTTTGATGTCAGGCTCTTTGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGC 21099945 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||||||| ||||| | |||||||||||||||||| || || || || ||| Sbjct 21099946 ACAGGAACACCGTCAGGGCCCACGAGGAACTTCTCGAAGTTCCATGCAACATCATTTCGG 21100005 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || ||||| |||| ||||||| ||||||| ||| ||||| | |||||||| Sbjct 21100006 CATACCGGAGATCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 21100065 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||||||||| || |||||||||||||| || || | || ||||| || ||| Sbjct 21100066 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGACCCCGCACCCTTCACC 21100125 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| | ||||| ||| Sbjct 21100126 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCAGACGTACTTG 21100185 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| ||| ||||| | |||| |||||| ||||| | || ||| |||| | |||| Sbjct 21100186 AGGGAATTCAAAATCTCTTCGTTCTTGGCGTTCTCCTGAGGTCCAAACGGGTTGCCCGGG 21100245 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || | ||||| ||||| ||||| | || |||||||||||||||||||||||||| ||| Sbjct 21100246 AAGCTGAGCACCACCAGGCCCCGGGGCCCAAGGCGCCGCTGCAGCTCGTTCATCTGGGTG 21100305 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || ||||||||||| |||||||||||||| || |||||||| |||| || |||| Sbjct 21100306 TAGGCCCGGACCGTGGGGCCTCAGAGGGACGCCACATTCTCGATAAGCAGCCCCTTGCCC 21100365 Query 83537 CGTA-AGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTA 83595 || | |||| | ||||||||| || || |||| | ||||| || ||| ||||||| Sbjct 21100366 CGCAGAGAA--CCGGGCTCACAGGCTCCCCGCCGGCCA-GGGGCGCGCCGAGGAGGCGTA 21100422 Query 83596 CAC 83598 ||| Sbjct 21100423 CAC 21100425 >seq48 Length=16679805 Score = 340 bits (376), Expect = 2e-88 Identities = 402/540 (74%), Gaps = 7/540 (1%) Strand=Plus/Plus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| | ||||| | ||| | | | | ||||||| ||| | ||||||||| |||| Sbjct 15545862 CAGGGCTTGAATGTCAGCCTCGATGTCAATGGTCTGGAAGCCCAG-CTGTACCTGTGCAC 15545920 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| | ||| || || ||| |||||||| || ||||||||| || | |||| | || Sbjct 15545921 GGGGGCACCGGTAGGGCCATCCAGGAACTTCTTGACGTTCCAGGCAACATTGTTGTGACA 15545980 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| ||||| | | || | || ||| ||| ||| | | ||||| ||| || Sbjct 15545981 CACCAGAGACACTGGA--GACCAGG---TCGGTCATGAGTGCCGTGGAGTCGTTGCTGGG 15546035 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 || ||||||||||| || ||||||||||| || || || |||||||||||||||||| Sbjct 15546036 CGTTGGCAGGGCCTC-CGCAGGAAGGCGAAAAGAGGGTGCAACCTTGCACCGTTGACCTC 15546094 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 || |||| |||||||| ||||| ||||||| || ||||| | ||| | |||||| Sbjct 15546095 GCGCTTCCCGAAGAGCGAGAAGTTGAGCTCGAACCCACCACCAGGTCAGACATACTTCAG 15546154 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418 |||| || ||||| |||||| |||||| ||||| || || |||||||| |||||||| Sbjct 15546155 GGAATTCAGAATCTCTTCATTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGGAA 15546214 Query 83419 CCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478 || ||||| ||||| | | | || |||||||||||||||||||||||||| ||||| Sbjct 15546215 GCCGAGCACCACCAGGTCACTGGGCCCAAGGCGCCGCTGCAGCTCGTTCATCTGGGTGTA 15546274 Query 83479 CTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 |||||||||||| | ||||||| |||||| || |||| ||| |||| || |||||| Sbjct 15546275 GTCCCGGACCGTGGTGCCTCAGAAGGACGCCACATTCTTGATAAGCAGCGCCTTGCCCCG 15546334 Query 83539 TAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | | ||| || || ||||| || || |||| || ||| | || ||| ||||||||| Sbjct 15546335 CAGGGAGCTTAGACTTACAGGCTCCCCGCCGGCCATGGGGAGCGCCAAGAGGGCGTACAC 15546394 >seq86 Length=9530769 Score = 306 bits (338), Expect = 4e-78 Identities = 270/337 (80%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| |||||||||||||| Sbjct 8940540 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGC 8940481 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||||||| ||||||| ||||||||| |||||||| || || || || ||| Sbjct 8940480 ACAGGAACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCATGCAACATCATTTCGG 8940421 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || |||||||||| ||||||| ||||||| ||| ||||| | |||||||| Sbjct 8940420 CATACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 8940361 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||||||||| || |||||||| ||||| || || | || |||||||| ||| Sbjct 8940360 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCAAAGAGAGGGTGCGACCCCGCACCGTTCACC 8940301 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 8940300 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 8940241 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| ||| ||||| | |||| |||||| |||| Sbjct 8940240 AGGGAATTCAAAATCTCTTCGTTCTTGGCGTTCTCCT 8940204 Score = 113 bits (124), Expect = 5e-20 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 8939956 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCGAGGC 8939897 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGAC 83487 |||||||||||||||||||||| ||||| |||||||| Sbjct 8939896 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGAC 8939860 >seq8 Length=45331107 Score = 306 bits (338), Expect = 4e-78 Identities = 352/471 (75%), Gaps = 6/471 (1%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| ||| |||| ||||| | | | | ||||||| ||||| |||||||||| || Sbjct 8884553 AGCAGGGCTTCGGTGTCAGGCTCGATGTCGATGGTCTGGAAGCGGCAGCTGTACCTGTGC 8884494 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 ||||| ||||||| ||||||| ||||||||| |||||||| | || ||| ||||| Sbjct 8884493 ACGGGGACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCACACAACATCGCTGCGG 8884434 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT--CATGTCGTCGC 83234 | | |||| || || ||||||| | ||||| ||| ||||| | |||| | ||| Sbjct 8884433 CCTCCCGGAGTCCCGGTGATGAGCTCGCGGTCGGTCATGAGCGCAGTGGCATG--GGCGC 8884376 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGA 83294 | ||||| ||||||||||| || ||| ||||||||| || | | || |||| ||| | Sbjct 8884375 TGGGCGCTGGCAGGGCCTCCCGCGGGACGGCGAAGAGAGGGCGCGACCCCGCACGGTTCA 8884316 Query 83295 CCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 ||||||||||||| |||||||| | | | | |||||| || | ||| |||||| || Sbjct 8884315 CCTCGCACTTCTCCAAGAGCATGACGCTGGACTCGAACCCAGCACGAGGCGGGACGTACT 8884256 Query 83355 TCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACG 83414 |||||| | ||||| | ||| |||||| |||| || || |||||||| ||| Sbjct 8884255 GGAGGGAATTCCGAATCTCTTCCTTCCTGGCGTTCTCCTAATGTCCAAACTGGTTGCACC 8884196 Query 83415 GGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAG 83474 ||| || ||||| |||| ||||| | || ||||||||||||||||||||| | | | Sbjct 8884195 TGAAGCCGAGCACCGCCAGGCCCCGGGGCCCGAGGCGCCGCTGCAGCTCGTTC--CCGGG 8884138 Query 83475 TGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525 || | |||||| ||||| | |||| ||||||||| ||||| ||| |||| Sbjct 8884137 TGGAGTCCCGGCCCGTGGTGCCTCCGAGGGACGCCGCGTTCCCGAGAAGCA 8884087 >seq80 Length=10391334 Score = 120 bits (132), Expect = 4e-22 Identities = 206/290 (71%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 5164662 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 5164604 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| | | |||||||||| || ||| | ||||||| Sbjct 5164603 TGGTGCACCTGTTCCCCGAGCTCTTCATGCCCGAGAACCTGCGCAAGCAGTACAACTGCA 5164544 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCT---GCGCTTGCTCCGGCAC 50584 ||||||| |||||||| |||| || || ||| ||| | || ||| ||| ||| Sbjct 5164543 GCGGCTCCCTGGGCAAGAAGCAG-CTAGAGCCGTCCCGCATCAAGCTCTT---CCGCCAC 5164488 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || |||||| |||| ||| | || | ||| ||||| |||| | ||||| || Sbjct 5164487 TACGTGCAGCTGCTCTACCTGTGTGCCAAAAGCGACCGCGTCTGGACCCTGGAGTTCGTG 5164428 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | |||||||||||||| |||||||| | |||||| || |||||| Sbjct 5164427 GGCAAACTGGACGAGCGCTGTCGGCGCCG--GGACACGGAGCAGAGGCGC 5164380 >seq59 Length=14671897 Score = 120 bits (132), Expect = 4e-22 Identities = 206/290 (71%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 12780968 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 12781026 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| | | |||||||||| || ||| | ||||||| Sbjct 12781027 TGGTGCACCTGTTCCCCGAGCTCTTCATGCCCGAGAACCTGCGCAAGCAGTACAACTGCA 12781086 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCT---GCGCTTGCTCCGGCAC 50584 ||||||| |||||||| |||| || || ||| ||| | || ||| ||| ||| Sbjct 12781087 GCGGCTCCCTGGGCAAGAAGCAG-CTAGAGCCGTCCCGCATCAAGCTCTT---CCGCCAC 12781142 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || |||||| |||| ||| | || | ||| ||||| |||| | ||||| || Sbjct 12781143 TACGTGCAGCTGCTCTACCTGTGTGCCAAAAGCGACCGCGTCTGGACCCTGGAGTTCGTG 12781202 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | |||||||||||||| |||||||| | |||||| || |||||| Sbjct 12781203 GGCAAACTGGACGAGCGCTGTCGGCGCCG--GGACACGGAGCAGAGGCGC 12781250 >seq78 Length=10444907 Score = 93.3 bits (102), Expect = 5e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 50440 GTCTATCTACAACTTCGCTGTGCGTATGCTCGTGTACATGTTTCCAGAGCTCTTTACTGC 50499 ||| ||| |||||| || ||| |||| ||| || |||| || |||||||| || Sbjct 9282333 GTCCATCGGCAACTTAGCCTCGCGCCTGCTGGTGCACCTGTTCCCTGAGCTCTTCACGCA 9282392 Query 50500 GGAGAACCTGCACACGCACTTCAACTGCTACGGCTCCATGGGCAAGC-GCAGGCTCGACC 50558 | |||||||| || ||| | ||||||| ||||||| ||||||| |||| || |||| Sbjct 9282393 CGGGAACCTGCGCAAGCAGTACAACTGCAGCGGCTCCCCGGGCAAGAAGCAG-CTAGACC 9282451 Query 50559 CGCTACGCCTGCGCTTGCTCCGGCACTATGTGCAGTTGCTGCACCCGGCGGCGCGCAACG 50618 || ||| | | |||| |||||||||||| |||| ||||| || |||| Sbjct 9282452 CGTCCCGCATCAAGCTCATCCGCCACTATGTGCAGCTGCTCTACCCGAGCGCCAAAAACG 9282511 Query 50619 AGCGCGTGTGGATCACAAAGTTCCTGGCGTGCCTGGACGAGCGCTGCCGGCGCCG 50673 | | || |||| | ||||| ||| || || |||||||| |||||||| Sbjct 9282512 ACCATGTCTGGACCCTGGAGTTCGTGGGCAAACTAGATGAGCGCTGTCGGCGCCG 9282566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608776359647440