Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq15 437 1e-117
seq48 340 2e-88
seq86 306 4e-78
seq8 306 4e-78
seq80 120 4e-22
seq59 120 4e-22
seq78 93.3 5e-14
>seq15
Length=36383700
Score = 437 bits (484), Expect = 1e-117
Identities = 425/543 (78%), Gaps = 4/543 (1%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| | |||||| ||||| | | | ||||||| ||||| ||||||||||||||
Sbjct 21099886 AGCAGGGCTTTGATGTCAGGCTCTTTGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGC 21099945
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| || ||||||| ||||| | |||||||||||||||||| || || || || |||
Sbjct 21099946 ACAGGAACACCGTCAGGGCCCACGAGGAACTTCTCGAAGTTCCATGCAACATCATTTCGG 21100005
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|| || ||||| |||| ||||||| ||||||| ||| ||||| | ||||||||
Sbjct 21100006 CATACCGGAGATCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 21100065
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
||||| ||||||||||| || |||||||||||||| || || | || ||||| || |||
Sbjct 21100066 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGACCCCGCACCCTTCACC 21100125
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||||||| ||||| |||||||| || ||||| | ||||| |||
Sbjct 21100126 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCAGACGTACTTG 21100185
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416
|||||| ||| ||||| | |||| |||||| ||||| | || ||| |||| | ||||
Sbjct 21100186 AGGGAATTCAAAATCTCTTCGTTCTTGGCGTTCTCCTGAGGTCCAAACGGGTTGCCCGGG 21100245
Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476
|| | ||||| ||||| ||||| | || |||||||||||||||||||||||||| |||
Sbjct 21100246 AAGCTGAGCACCACCAGGCCCCGGGGCCCAAGGCGCCGCTGCAGCTCGTTCATCTGGGTG 21100305
Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536
|| ||||||||||| |||||||||||||| || |||||||| |||| || ||||
Sbjct 21100306 TAGGCCCGGACCGTGGGGCCTCAGAGGGACGCCACATTCTCGATAAGCAGCCCCTTGCCC 21100365
Query 83537 CGTA-AGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTA 83595
|| | |||| | ||||||||| || || |||| | ||||| || ||| |||||||
Sbjct 21100366 CGCAGAGAA--CCGGGCTCACAGGCTCCCCGCCGGCCA-GGGGCGCGCCGAGGAGGCGTA 21100422
Query 83596 CAC 83598
|||
Sbjct 21100423 CAC 21100425
>seq48
Length=16679805
Score = 340 bits (376), Expect = 2e-88
Identities = 402/540 (74%), Gaps = 7/540 (1%)
Strand=Plus/Plus
Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118
|||||| | ||||| | ||| | | | | ||||||| ||| | ||||||||| ||||
Sbjct 15545862 CAGGGCTTGAATGTCAGCCTCGATGTCAATGGTCTGGAAGCCCAG-CTGTACCTGTGCAC 15545920
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
||| | ||| || || ||| |||||||| || ||||||||| || | |||| | ||
Sbjct 15545921 GGGGGCACCGGTAGGGCCATCCAGGAACTTCTTGACGTTCCAGGCAACATTGTTGTGACA 15545980
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238
||| ||||| | | || | || ||| ||| ||| | | ||||| ||| ||
Sbjct 15545981 CACCAGAGACACTGGA--GACCAGG---TCGGTCATGAGTGCCGTGGAGTCGTTGCTGGG 15546035
Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298
|| ||||||||||| || ||||||||||| || || || ||||||||||||||||||
Sbjct 15546036 CGTTGGCAGGGCCTC-CGCAGGAAGGCGAAAAGAGGGTGCAACCTTGCACCGTTGACCTC 15546094
Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358
|| |||| |||||||| ||||| ||||||| || ||||| | ||| | ||||||
Sbjct 15546095 GCGCTTCCCGAAGAGCGAGAAGTTGAGCTCGAACCCACCACCAGGTCAGACATACTTCAG 15546154
Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418
|||| || ||||| |||||| |||||| ||||| || || |||||||| ||||||||
Sbjct 15546155 GGAATTCAGAATCTCTTCATTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGGAA 15546214
Query 83419 CCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478
|| ||||| ||||| | | | || |||||||||||||||||||||||||| |||||
Sbjct 15546215 GCCGAGCACCACCAGGTCACTGGGCCCAAGGCGCCGCTGCAGCTCGTTCATCTGGGTGTA 15546274
Query 83479 CTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCG 83538
|||||||||||| | ||||||| |||||| || |||| ||| |||| || ||||||
Sbjct 15546275 GTCCCGGACCGTGGTGCCTCAGAAGGACGCCACATTCTTGATAAGCAGCGCCTTGCCCCG 15546334
Query 83539 TAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| | ||| || || ||||| || || |||| || ||| | || ||| |||||||||
Sbjct 15546335 CAGGGAGCTTAGACTTACAGGCTCCCCGCCGGCCATGGGGAGCGCCAAGAGGGCGTACAC 15546394
>seq86
Length=9530769
Score = 306 bits (338), Expect = 4e-78
Identities = 270/337 (80%), Gaps = 0/337 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||||
Sbjct 8940540 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGC 8940481
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| || ||||||| ||||||| ||||||||| |||||||| || || || || |||
Sbjct 8940480 ACAGGAACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCATGCAACATCATTTCGG 8940421
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|| || |||||||||| ||||||| ||||||| ||| ||||| | ||||||||
Sbjct 8940420 CATACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 8940361
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
||||| ||||||||||| || |||||||| ||||| || || | || |||||||| |||
Sbjct 8940360 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCAAAGAGAGGGTGCGACCCCGCACCGTTCACC 8940301
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||||||| ||||| |||||||| || ||||| ||||||| |||
Sbjct 8940300 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 8940241
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
|||||| ||| ||||| | |||| |||||| ||||
Sbjct 8940240 AGGGAATTCAAAATCTCTTCGTTCTTGGCGTTCTCCT 8940204
Score = 113 bits (124), Expect = 5e-20
Identities = 83/97 (86%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| ||||| ||||| | || ||||
Sbjct 8939956 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCGAGGC 8939897
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGAC 83487
|||||||||||||||||||||| ||||| ||||||||
Sbjct 8939896 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGAC 8939860
>seq8
Length=45331107
Score = 306 bits (338), Expect = 4e-78
Identities = 352/471 (75%), Gaps = 6/471 (1%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| ||| |||| ||||| | | | | ||||||| ||||| |||||||||| ||
Sbjct 8884553 AGCAGGGCTTCGGTGTCAGGCTCGATGTCGATGGTCTGGAAGCGGCAGCTGTACCTGTGC 8884494
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
||||| ||||||| ||||||| ||||||||| |||||||| | || ||| |||||
Sbjct 8884493 ACGGGGACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCACACAACATCGCTGCGG 8884434
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT--CATGTCGTCGC 83234
| | |||| || || ||||||| | ||||| ||| ||||| | |||| | |||
Sbjct 8884433 CCTCCCGGAGTCCCGGTGATGAGCTCGCGGTCGGTCATGAGCGCAGTGGCATG--GGCGC 8884376
Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGA 83294
| ||||| ||||||||||| || ||| ||||||||| || | | || |||| ||| |
Sbjct 8884375 TGGGCGCTGGCAGGGCCTCCCGCGGGACGGCGAAGAGAGGGCGCGACCCCGCACGGTTCA 8884316
Query 83295 CCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354
||||||||||||| |||||||| | | | | |||||| || | ||| |||||| ||
Sbjct 8884315 CCTCGCACTTCTCCAAGAGCATGACGCTGGACTCGAACCCAGCACGAGGCGGGACGTACT 8884256
Query 83355 TCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACG 83414
|||||| | ||||| | ||| |||||| |||| || || |||||||| |||
Sbjct 8884255 GGAGGGAATTCCGAATCTCTTCCTTCCTGGCGTTCTCCTAATGTCCAAACTGGTTGCACC 8884196
Query 83415 GGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAG 83474
||| || ||||| |||| ||||| | || ||||||||||||||||||||| | | |
Sbjct 8884195 TGAAGCCGAGCACCGCCAGGCCCCGGGGCCCGAGGCGCCGCTGCAGCTCGTTC--CCGGG 8884138
Query 83475 TGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525
|| | |||||| ||||| | |||| ||||||||| ||||| ||| ||||
Sbjct 8884137 TGGAGTCCCGGCCCGTGGTGCCTCCGAGGGACGCCGCGTTCCCGAGAAGCA 8884087
>seq80
Length=10391334
Score = 120 bits (132), Expect = 4e-22
Identities = 206/290 (71%), Gaps = 13/290 (4%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| |||
Sbjct 5164662 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 5164604
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| | | |||||||||| || ||| | |||||||
Sbjct 5164603 TGGTGCACCTGTTCCCCGAGCTCTTCATGCCCGAGAACCTGCGCAAGCAGTACAACTGCA 5164544
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCT---GCGCTTGCTCCGGCAC 50584
||||||| |||||||| |||| || || ||| ||| | || ||| ||| |||
Sbjct 5164543 GCGGCTCCCTGGGCAAGAAGCAG-CTAGAGCCGTCCCGCATCAAGCTCTT---CCGCCAC 5164488
Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644
|| |||||| |||| ||| | || | ||| ||||| |||| | ||||| ||
Sbjct 5164487 TACGTGCAGCTGCTCTACCTGTGTGCCAAAAGCGACCGCGTCTGGACCCTGGAGTTCGTG 5164428
Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
| |||||||||||||| |||||||| | |||||| || ||||||
Sbjct 5164427 GGCAAACTGGACGAGCGCTGTCGGCGCCG--GGACACGGAGCAGAGGCGC 5164380
>seq59
Length=14671897
Score = 120 bits (132), Expect = 4e-22
Identities = 206/290 (71%), Gaps = 13/290 (4%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| |||
Sbjct 12780968 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 12781026
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| | | |||||||||| || ||| | |||||||
Sbjct 12781027 TGGTGCACCTGTTCCCCGAGCTCTTCATGCCCGAGAACCTGCGCAAGCAGTACAACTGCA 12781086
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCT---GCGCTTGCTCCGGCAC 50584
||||||| |||||||| |||| || || ||| ||| | || ||| ||| |||
Sbjct 12781087 GCGGCTCCCTGGGCAAGAAGCAG-CTAGAGCCGTCCCGCATCAAGCTCTT---CCGCCAC 12781142
Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644
|| |||||| |||| ||| | || | ||| ||||| |||| | ||||| ||
Sbjct 12781143 TACGTGCAGCTGCTCTACCTGTGTGCCAAAAGCGACCGCGTCTGGACCCTGGAGTTCGTG 12781202
Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
| |||||||||||||| |||||||| | |||||| || ||||||
Sbjct 12781203 GGCAAACTGGACGAGCGCTGTCGGCGCCG--GGACACGGAGCAGAGGCGC 12781250
>seq78
Length=10444907
Score = 93.3 bits (102), Expect = 5e-14
Identities = 163/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 50440 GTCTATCTACAACTTCGCTGTGCGTATGCTCGTGTACATGTTTCCAGAGCTCTTTACTGC 50499
||| ||| |||||| || ||| |||| ||| || |||| || |||||||| ||
Sbjct 9282333 GTCCATCGGCAACTTAGCCTCGCGCCTGCTGGTGCACCTGTTCCCTGAGCTCTTCACGCA 9282392
Query 50500 GGAGAACCTGCACACGCACTTCAACTGCTACGGCTCCATGGGCAAGC-GCAGGCTCGACC 50558
| |||||||| || ||| | ||||||| ||||||| ||||||| |||| || ||||
Sbjct 9282393 CGGGAACCTGCGCAAGCAGTACAACTGCAGCGGCTCCCCGGGCAAGAAGCAG-CTAGACC 9282451
Query 50559 CGCTACGCCTGCGCTTGCTCCGGCACTATGTGCAGTTGCTGCACCCGGCGGCGCGCAACG 50618
|| ||| | | |||| |||||||||||| |||| ||||| || ||||
Sbjct 9282452 CGTCCCGCATCAAGCTCATCCGCCACTATGTGCAGCTGCTCTACCCGAGCGCCAAAAACG 9282511
Query 50619 AGCGCGTGTGGATCACAAAGTTCCTGGCGTGCCTGGACGAGCGCTGCCGGCGCCG 50673
| | || |||| | ||||| ||| || || |||||||| ||||||||
Sbjct 9282512 ACCATGTCTGGACCCTGGAGTTCGTGGGCAAACTAGATGAGCGCTGTCGGCGCCG 9282566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608776359647440
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