Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq33 125 6e-24
seq71 116 3e-21
seq9 114 1e-20
seq79 109 5e-19
seq59 104 2e-17
seq11 95.1 1e-14
seq7 95.1 1e-14
seq77 91.5 1e-13
seq2 91.5 1e-13
>seq33
Length=21137282
Score = 125 bits (138), Expect = 6e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | || |||| |||| || ||||| || || ||||| ||||| |
Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || ||| | || |||||||| ||||| ||| | || || ||||||||||| ||
Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||| || |||||| ||||| | ||| || |||| |||||||
Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
|||| || |||||||||||||| | || || || || || ||||||||||
Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 15373525
>seq71
Length=11673789
Score = 116 bits (128), Expect = 3e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| ||||| || || ||||| ||||| | || || || | || |||||||| |||||
Sbjct 72269 GTTGACTCTTTCTGGATGTTGTAGTCAGGAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 72210
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || || ||||||||||| ||| | ||||||||| || |||||| ||
Sbjct 72209 GCAAAGATGAGCCTCTGCTGGTCGTGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 72150
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || |||| |||||| |||| ||| |||||||||||||| | ||
Sbjct 72149 ACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 72090
Query 21159 TTGACAAATATTTGCATTTTGA 21180
|| ||||| || ||||||||||
Sbjct 72089 TTCACAAAGATCTGCATTTTGA 72068
>seq9
Length=44311105
Score = 114 bits (126), Expect = 1e-20
Identities = 162/227 (71%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| | ||||||| |||| ||||||||||| || ||||| ||||| |
Sbjct 14505871 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG-- 14505814
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||||||||||||||| ||| | || || | ||||||||| | ||
Sbjct 14505813 AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGGG 14505754
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| || || ||| || | | || |||| ||||||
Sbjct 14505753 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACC 14505694
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| ||||||||||| || | || || ||||| || |||||
Sbjct 14505693 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647
Score = 93.3 bits (102), Expect = 4e-14
Identities = 161/232 (69%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 20954 TCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGT 21013
|||||| | ||||||| |||| |||||||| || || ||||| || || | || ||
Sbjct 19097348 TCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTG--AGCGT 19097291
Query 21014 TTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCC 21073
|| | |||||||||||||||| ||| | || || | ||||||||| || | ||
Sbjct 19097290 GAGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACC 19097231
Query 21074 TTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCAC 21133
|||||||| || || ||| || | | | || |||| |||||| || |
Sbjct 19097230 CTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAG 19097171
Query 21134 GGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184
||| ||||||||||| || | || || ||||| || ||||| | || ||||
Sbjct 19097170 GGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCTGCATCT 19097119
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | ||||| | |||| |||||||| || |||||||| ||||| |
Sbjct 3708446 CCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 3708387
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | |||||||||||||| || ||| | || || | ||||||||| ||
Sbjct 3708386 AGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGGG 3708327
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| || || ||| || | | ||||||| ||||||
Sbjct 3708326 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCGACC 3708267
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||| |||| || | || || ||||| || || ||
Sbjct 3708266 TCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220
>seq79
Length=10412959
Score = 109 bits (120), Expect = 5e-19
Identities = 158/224 (71%), Gaps = 7/224 (3%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| || ||||| || || ||||| ||||| | || || || | ||
Sbjct 108418 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 108359
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG-------GGCACGCCTTC 21076
|||||||| ||||| ||| | || || |||||||| || | || | ||||||
Sbjct 108358 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGAGAGGGGGGAATGCCTTC 108299
Query 21077 CTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGT 21136
||| || |||||| ||||| | ||| || |||| ||||||| ||||| |||
Sbjct 108298 CTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGT 108239
Query 21137 AATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
|||||||||||||| | || || |||| || ||||||||||
Sbjct 108238 GATGGTCTTGCCGGTCATGGTCTTCGCAAAGATCTGCATTTTGA 108195
>seq59
Length=14671897
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| | ||||||| || || ||||| ||||| | |||||| | | ||
Sbjct 11745337 AGGACCAAGTGCAGAATGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 11745278
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
||||||||||| || ||| | || | |||||||||||| || | ||||||||||||
Sbjct 11745277 TCCAGCTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 11745218
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||||| || || | | | || |||| |||||| || | ||| ||||||
Sbjct 11745217 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 11745158
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| | || || || || || |||||
Sbjct 11745157 TTACTGGTAAGGGTCTTCACGAAGATCTGCAT 11745126
>seq11
Length=43820709
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| ||||||| |||| |||||||| || || ||||| | ||| |
Sbjct 25320731 CCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAG 25320790
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||||||||||||||| ||| | || || | ||||||||| ||
Sbjct 25320791 AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 25320850
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || | |||||| || || ||| || | | | || |||| ||||||
Sbjct 25320851 ATACCCTTCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 25320910
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| ||||||||||| || | || || ||||| || |||||
Sbjct 25320911 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957
>seq7
Length=46157118
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/229 (69%), Gaps = 12/229 (5%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| || ||||| || || |||| ||||| | || || || | ||
Sbjct 37069870 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTCGTAGTCAGAAAGAGTGCGGCCATCT 37069929
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || ||||| ||||| |||| | ||||||||| ||
Sbjct 37069930 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGGTGGTCGGCGGGGATGCCTTCCTTATCC 37069989
Query 21084 -GCGAT------CTTTTGTT-----TCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131
| ||| ||| | || |||| | ||| || |||| ||||||| |||
Sbjct 37069990 TGGGATGCCTTCCTTATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCC 37070049
Query 21132 ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
| ||| |||||||||||||| | || || || | || ||||||||||
Sbjct 37070050 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGACAATCTGCATTTTGA 37070098
>seq77
Length=10698663
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080
|| |||||||| ||||| ||| | || || ||||||||||| ||| | |||||||||
Sbjct 10127808 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTA 10127749
Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140
|| |||||| ||||| | ||| || |||| ||||||| |||| ||| |||
Sbjct 10127748 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 10127689
Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||| || | || || || || || |||||
Sbjct 10127688 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 10127654
>seq2
Length=71252344
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 20983 ACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCAT 21042
|||| || || |||| ||||| | | || ||| | || | |||||| ||||| |||
Sbjct 43675542 ACTCTTTCTGGATGTCGTAGTCAGAAGGAGTGTGGCCATCTTTCAGCTGCTTGCCTGCAA 43675483
Query 21043 AAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCT 21102
|||| || |||||||| || ||| | |||| ||| || ||||| ||||| |
Sbjct 43675482 AAATGAGCCTCTGCTGTTCGGTGGGGATGCCTCTCTTATCCTGGATCTCAGCCTTCACAT 43675423
Query 21103 GGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGA 21162
|| || |||| |||||| |||| ||| ||||||||||| || | || || |
Sbjct 43675422 CTTAGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 43675363
Query 21163 CAAATATTTGCATTTTGA 21180
||||||| ||||||||||
Sbjct 43675362 CAAATATCTGCATTTTGA 43675345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422245377081176
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