Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq33 125 6e-24 seq71 116 3e-21 seq9 114 1e-20 seq79 109 5e-19 seq59 104 2e-17 seq11 95.1 1e-14 seq7 95.1 1e-14 seq77 91.5 1e-13 seq2 91.5 1e-13 >seq33 Length=21137282 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || |||| |||| || ||||| || || ||||| ||||| | Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || ||| | || |||||||| ||||| ||| | || || ||||||||||| || Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || |||||| ||||| | ||| || |||| ||||||| Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| || |||||||||||||| | || || || || || |||||||||| Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 15373525 >seq71 Length=11673789 Score = 116 bits (128), Expect = 3e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || || ||||| ||||| | || || || | || |||||||| ||||| Sbjct 72269 GTTGACTCTTTCTGGATGTTGTAGTCAGGAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 72210 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||||||||| || |||||| || Sbjct 72209 GCAAAGATGAGCCTCTGCTGGTCGTGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 72150 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| |||||| |||| ||| |||||||||||||| | || Sbjct 72149 ACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 72090 Query 21159 TTGACAAATATTTGCATTTTGA 21180 || ||||| || |||||||||| Sbjct 72089 TTCACAAAGATCTGCATTTTGA 72068 >seq9 Length=44311105 Score = 114 bits (126), Expect = 1e-20 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| ||||||||||| || ||||| ||||| | Sbjct 14505871 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG-- 14505814 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||||||||| ||| | || || | ||||||||| | || Sbjct 14505813 AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGGG 14505754 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || ||| || | | || |||| |||||| Sbjct 14505753 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACC 14505694 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 14505693 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 20954 TCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGT 21013 |||||| | ||||||| |||| |||||||| || || ||||| || || | || || Sbjct 19097348 TCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTG--AGCGT 19097291 Query 21014 TTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCC 21073 || | |||||||||||||||| ||| | || || | ||||||||| || | || Sbjct 19097290 GAGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACC 19097231 Query 21074 TTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCAC 21133 |||||||| || || ||| || | | | || |||| |||||| || | Sbjct 19097230 CTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAG 19097171 Query 21134 GGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 ||| ||||||||||| || | || || ||||| || ||||| | || |||| Sbjct 19097170 GGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCTGCATCT 19097119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | |||| |||||||| || |||||||| ||||| | Sbjct 3708446 CCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 3708387 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | |||||||||||||| || ||| | || || | ||||||||| || Sbjct 3708386 AGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGGG 3708327 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || ||| || | | ||||||| |||||| Sbjct 3708326 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCGACC 3708267 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||| |||| || | || || ||||| || || || Sbjct 3708266 TCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220 >seq79 Length=10412959 Score = 109 bits (120), Expect = 5e-19 Identities = 158/224 (71%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| ||||| | || || || | || Sbjct 108418 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 108359 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG-------GGCACGCCTTC 21076 |||||||| ||||| ||| | || || |||||||| || | || | |||||| Sbjct 108358 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGAGAGGGGGGAATGCCTTC 108299 Query 21077 CTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGT 21136 ||| || |||||| ||||| | ||| || |||| ||||||| ||||| ||| Sbjct 108298 CTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGT 108239 Query 21137 AATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||||||||| | || || |||| || |||||||||| Sbjct 108238 GATGGTCTTGCCGGTCATGGTCTTCGCAAAGATCTGCATTTTGA 108195 >seq59 Length=14671897 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| | ||||||| || || ||||| ||||| | |||||| | | || Sbjct 11745337 AGGACCAAGTGCAGAATGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 11745278 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | |||||||||||| || | |||||||||||| Sbjct 11745277 TCCAGCTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 11745218 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| || | ||| |||||| Sbjct 11745217 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 11745158 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| | || || || || || ||||| Sbjct 11745157 TTACTGGTAAGGGTCTTCACGAAGATCTGCAT 11745126 >seq11 Length=43820709 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| ||||||| |||| |||||||| || || ||||| | ||| | Sbjct 25320731 CCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAG 25320790 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||||||||| ||| | || || | ||||||||| || Sbjct 25320791 AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 25320850 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || | |||||| || || ||| || | | | || |||| |||||| Sbjct 25320851 ATACCCTTCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 25320910 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 25320911 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957 >seq7 Length=46157118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 12/229 (5%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || |||| ||||| | || || || | || Sbjct 37069870 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTCGTAGTCAGAAAGAGTGCGGCCATCT 37069929 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||| ||||| |||| | ||||||||| || Sbjct 37069930 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGGTGGTCGGCGGGGATGCCTTCCTTATCC 37069989 Query 21084 -GCGAT------CTTTTGTT-----TCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131 | ||| ||| | || |||| | ||| || |||| ||||||| ||| Sbjct 37069990 TGGGATGCCTTCCTTATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCC 37070049 Query 21132 ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 | ||| |||||||||||||| | || || || | || |||||||||| Sbjct 37070050 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGACAATCTGCATTTTGA 37070098 >seq77 Length=10698663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080 || |||||||| ||||| ||| | || || ||||||||||| ||| | ||||||||| Sbjct 10127808 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTA 10127749 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || |||||| ||||| | ||| || |||| ||||||| |||| ||| ||| Sbjct 10127748 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 10127689 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || | || || || || || ||||| Sbjct 10127688 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 10127654 >seq2 Length=71252344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20983 ACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCAT 21042 |||| || || |||| ||||| | | || ||| | || | |||||| ||||| ||| Sbjct 43675542 ACTCTTTCTGGATGTCGTAGTCAGAAGGAGTGTGGCCATCTTTCAGCTGCTTGCCTGCAA 43675483 Query 21043 AAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCT 21102 |||| || |||||||| || ||| | |||| ||| || ||||| ||||| | Sbjct 43675482 AAATGAGCCTCTGCTGTTCGGTGGGGATGCCTCTCTTATCCTGGATCTCAGCCTTCACAT 43675423 Query 21103 GGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGA 21162 || || |||| |||||| |||| ||| ||||||||||| || | || || | Sbjct 43675422 CTTAGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 43675363 Query 21163 CAAATATTTGCATTTTGA 21180 ||||||| |||||||||| Sbjct 43675362 CAAATATCTGCATTTTGA 43675345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422245377081176