Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq134 109 5e-19 seq38 109 5e-19 seq102 104 2e-17 seq52 104 2e-17 seq101 100 2e-16 seq85 87.8 1e-12 seq54 84.2 2e-11 seq63 82.4 6e-11 >seq134 Length=5851302 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 3733157 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 3733216 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 3733217 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3733276 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 3733277 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 3733336 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||| ||||| ||||||||||| | ||||| Sbjct 3733337 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 3733371 >seq38 Length=19171412 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 14820745 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 14820686 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 14820685 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 14820626 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 14820625 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 14820566 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||| ||||| ||||||||||| | ||||| Sbjct 14820565 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 14820531 >seq102 Length=8035806 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| |||| |||||| Sbjct 179381 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAAGTTGAACCC 179440 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| | | | | || | ||| | ||| ||||| ||| | | || ||| Sbjct 179441 TCAGATAAGATAGAAAATGTAAAGGCCACAATCCATGATAAGGAAAGAATTCCTCCTGAT 179500 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | ||| Sbjct 179501 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGAC----TAC 179556 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| ||||| |||||| ||||||| Sbjct 179557 AACATTCAAAAGGAGTCTACACTTCACCTGGTGTT 179591 >seq52 Length=16356641 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 10618873 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 10618932 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || || Sbjct 10618933 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAG 10618992 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 10618993 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 10619052 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTAC 25248 || ||||| ||||| ||||||||||| | ||||||| Sbjct 10619053 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTAC 10619089 >seq101 Length=8127303 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||||| ||||| | | ||| || || || ||| ||| |||| | Sbjct 4242109 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACTATCACCCTCGAGGATGAACTC 4242050 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| | | | || | ||| || || ||||||||||| | || ||| Sbjct 4242049 TCAGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 4241990 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| ||||||||| ||| || | || || Sbjct 4241989 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATTGTTGTACTTTGTCTGACTAT 4241930 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| ||||||||||| | ||||| Sbjct 4241929 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 4241895 >seq85 Length=9676098 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | || || || ||||| ||| ||| |||||| Sbjct 5982426 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 5982485 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | || | ||| || || ||||| ||||| | || ||| Sbjct 5982486 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 5982545 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAA---ACTATGGCCGAT 25208 || ||||||| |||||||| ||||| || ||||||| || | ||| || | || Sbjct 5982546 CAGCAAAGACGGATCTTTGCTGGCAAGTAACTGGAAGA---CAGACGTACTTTGTCTGAC 5982602 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||| ||||||||||| ||||||||||| | ||||| Sbjct 5982603 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 5982640 >seq54 Length=16265076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 25033 AAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCG 25092 ||| ||| || || | ||||| | || || || ||||| ||| ||| | |||||| Sbjct 5607227 AAAAGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGCTGAACCCT 5607168 Query 25093 CAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 25152 | || || | || | ||| || ||| ||||| ||||| | || |||| Sbjct 5607167 CGGATACTACAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATC 5607108 Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACA 25212 | |||||||| |||||||| ||||| ||| |||||||| | | || | || |||| Sbjct 5607107 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTATTTTGTCTGACTACA 5607048 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 | ||||| ||||| ||||||||||| | ||||| Sbjct 5607047 ACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 5607014 >seq63 Length=13147851 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||| |||||||| |||||||| ||||| ||| ||||| Sbjct 9542390 GATAAGGAAGGAATCCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 9542331 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTT 25235 ||| ||| || | || ||||| ||||||||||| ||||||||| Sbjct 9542330 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTT 9542283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410783352310004