Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq134 109 5e-19
seq38 109 5e-19
seq102 104 2e-17
seq52 104 2e-17
seq101 100 2e-16
seq85 87.8 1e-12
seq54 84.2 2e-11
seq63 82.4 6e-11
>seq134
Length=5851302
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 3733157 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 3733216
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
|||| ||| | | || | ||| || || ||||| ||||| | || |||
Sbjct 3733217 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3733276
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| |||||||| ||| || | || |||
Sbjct 3733277 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 3733336
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|| ||||| ||||| ||||||||||| | |||||
Sbjct 3733337 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 3733371
>seq38
Length=19171412
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 14820745 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 14820686
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
|||| ||| | | || | ||| || || ||||| ||||| | || |||
Sbjct 14820685 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 14820626
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| |||||||| ||| || | || |||
Sbjct 14820625 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 14820566
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|| ||||| ||||| ||||||||||| | |||||
Sbjct 14820565 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 14820531
>seq102
Length=8035806
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | ||||| || ||||| ||| |||| ||||||
Sbjct 179381 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAAGTTGAACCC 179440
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
|||| | | | | || | ||| | ||| ||||| ||| | | || |||
Sbjct 179441 TCAGATAAGATAGAAAATGTAAAGGCCACAATCCATGATAAGGAAAGAATTCCTCCTGAT 179500
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| |||||||| ||| || | |||
Sbjct 179501 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGAC----TAC 179556
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|| ||||||||||| ||||| |||||| |||||||
Sbjct 179557 AACATTCAAAAGGAGTCTACACTTCACCTGGTGTT 179591
>seq52
Length=16356641
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 10618873 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 10618932
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
| || ||| | | || | ||| || || ||||| ||||| | || ||
Sbjct 10618933 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAG 10618992
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| |||||||| ||| || | || |||
Sbjct 10618993 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 10619052
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTAC 25248
|| ||||| ||||| ||||||||||| | |||||||
Sbjct 10619053 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTAC 10619089
>seq101
Length=8127303
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||||| ||||| | | ||| || || || ||| ||| |||| |
Sbjct 4242109 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACTATCACCCTCGAGGATGAACTC 4242050
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
|||| | | | || | ||| || || ||||||||||| | || |||
Sbjct 4242049 TCAGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 4241990
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| ||||||||| ||| || | || ||
Sbjct 4241989 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATTGTTGTACTTTGTCTGACTAT 4241930
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|| ||||||||||| ||||||||||| | |||||
Sbjct 4241929 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 4241895
>seq85
Length=9676098
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | || || || ||||| ||| ||| ||||||
Sbjct 5982426 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 5982485
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
| || ||| | || | ||| || || ||||| ||||| | || |||
Sbjct 5982486 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 5982545
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAA---ACTATGGCCGAT 25208
|| ||||||| |||||||| ||||| || ||||||| || | ||| || | ||
Sbjct 5982546 CAGCAAAGACGGATCTTTGCTGGCAAGTAACTGGAAGA---CAGACGTACTTTGTCTGAC 5982602
Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
||||| ||||||||||| ||||||||||| | |||||
Sbjct 5982603 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 5982640
>seq54
Length=16265076
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 25033 AAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCG 25092
||| ||| || || | ||||| | || || || ||||| ||| ||| | ||||||
Sbjct 5607227 AAAAGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGCTGAACCCT 5607168
Query 25093 CAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 25152
| || || | || | ||| || ||| ||||| ||||| | || ||||
Sbjct 5607167 CGGATACTACAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATC 5607108
Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACA 25212
| |||||||| |||||||| ||||| ||| |||||||| | | || | || ||||
Sbjct 5607107 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTATTTTGTCTGACTACA 5607048
Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
| ||||| ||||| ||||||||||| | |||||
Sbjct 5607047 ACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 5607014
>seq63
Length=13147851
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| ||||| | || ||||| |||||||| |||||||| ||||| ||| |||||
Sbjct 9542390 GATAAGGAAGGAATCCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 9542331
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTT 25235
||| ||| || | || ||||| ||||||||||| |||||||||
Sbjct 9542330 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTT 9542283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410783352310004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |