Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq22 111 1e-19 seq12 89.7 4e-13 >seq22 Length=27210278 Score = 111 bits (122), Expect = 1e-19 Identities = 251/375 (67%), Gaps = 2/375 (1%) Strand=Plus/Plus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| |||||| || | |||| | || || ||| | ||| ||| Sbjct 26912450 TAAACAGCCATTTCCATTTTAATAGTTGGGTGCAGATTGTACCCTTCAACCTTAAAGTCT 26912509 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGC 97017 | ||||| || |||||||| ||| |||| || ||| || |||||||||| Sbjct 26912510 TCAGCTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAAGGT 26912569 Query 97018 CTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCA 97077 ||| | || | |||||| | | || | || |||||||||| ||||| || ||| Sbjct 26912570 CTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGCA 26912629 Query 97078 TCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAA 97137 ||||| |||| || | ||| || || || | | |||| || |||||| | Sbjct 26912630 TCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGATCATGTAC 26912689 Query 97138 GTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTT 97197 || | || | ||||| | ||||| ||||||| ||||| |||| || |||||| Sbjct 26912690 GTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCTTGATCTC 26912749 Query 97198 TGATATAACTGACAGGAAAGCTTTC-CATCACACACATAAAACTGACTCAATACATGACA 97256 || || | ||||||||| |||| | |||| ||| || ||||| | | |||| || Sbjct 26912750 TGGTACAGCTGACAGGACAGCTCACTGTTCAC-CACGTAGAACTGGCAGAGGGCATGGCA 26912808 Query 97257 GGGGGGCAACGCCAT 97271 |||||||||||||| Sbjct 26912809 TGGGGGCAACGCCAT 26912823 >seq12 Length=39782659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||| |||||||| ||||| ||||| |||||||| || || | ||| ||||||||| Sbjct 25685087 TATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 25685028 Query 97462 CTATCACAGAA-ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTG 97520 || | |||| |||||| |||| | | || | |||||||| |||||||| || | Sbjct 25685027 CTGGCGGAGAATCCCAAGC-TATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTT 25684969 Query 97521 CACACC 97526 ||| || Sbjct 25684968 CACTCC 25684963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346772647809020