Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq11 89.7 8e-13
seq9 87.8 3e-12
seq88 86.0 9e-12
>seq11
Length=43820709
Score = 89.7 bits (98), Expect = 8e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || |||||||| || || || | ||| | || | | |
Sbjct 25320957 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 25320898
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| ||||||||||| || | ||||| |||||||| ||
Sbjct 25320897 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGAAGGGTATCCCACCTGACCAG 25320838
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || ||||| || ||||| | |||||| | || || | ||| | ||
Sbjct 25320837 CAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACGCTCTCAGACAACAAC 25320778
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
|| || ||||| || || |||| |||| | | | |||||||| ||||
Sbjct 25320777 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCACCTGCGAGGTGGCATTA 25320726
>seq9
Length=44311105
Score = 87.8 bits (96), Expect = 3e-12
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || ||||| || || || | ||| | || | | |
Sbjct 14505647 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 14505706
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || | | ||| | ||| ||||||||||| || |||||||| |||| ||| ||
Sbjct 14505707 GACACCACTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACTTGACCAG 14505766
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || ||||| || ||||| | |||||| | || || | ||| || ||
Sbjct 14505767 CAGTGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACGCT--CAGACTACAAC 14505824
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
|| || || || || || |||| |||| | || | |||||||| ||||
Sbjct 14505825 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTA 14505876
Score = 86.0 bits (94), Expect = 9e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|| || || ||| | ||||| || || |||| || || || | ||| | || | | |
Sbjct 3708220 ATACAGATCTTTGTGAAGACCCTCACGGGCAGGACCATCACCCTTGAGGTCGAGCCCAGT 3708279
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| | | ||| | ||| ||||||||||| || || ||||| |||||||| ||
Sbjct 3708280 GATACCACTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 3708339
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || ||||| || ||||| | |||||| | | ||| | ||| || ||
Sbjct 3708340 CAGTGTCTGATATTTGCCGGTAAACAGCTGGAGGATGGCGGCACACTCTCAGACTACAAC 3708399
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
||||| ||||| || || |||| | || | || | ||||||| ||||
Sbjct 3708400 ATTCAGAAAGAGTCCACCCTGCACCTAGTGCTGCGCCTGTGAGGTGGCATTA 3708451
>seq88
Length=9397244
Score = 86.0 bits (94), Expect = 9e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124541 GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGA 124600
||| || ||| | ||||| || || ||||| || || || | || | || | | |||
Sbjct 1074345 GCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTAAGGTCGAGCCCAGTGA 1074286
Query 124601 TACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACA 124660
|| ||| ||| | ||| ||||||||||| || || ||||| ||| ||||||| ||
Sbjct 1074285 CACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCATCTGATCAGCA 1074226
Query 124661 AAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATAT 124720
|| || ||||| || ||||| | |||||| | || ||| | ||| || || ||
Sbjct 1074225 GCCTCTGATATTTGCTGGTAAACAGCTGGAGGATGGCCGCACACTCTCAGACTACAACAT 1074166
Query 124721 TCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
|| ||||| || || |||| | ||| | | | |||||||| ||||
Sbjct 1074165 CCAGAAAGAGTCCACCCTGCACTGGGTGCTGCACCTGCGAGGTGGCATTA 1074116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755430635564800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |