Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq11 89.7 8e-13 seq9 87.8 3e-12 seq88 86.0 9e-12 >seq11 Length=43820709 Score = 89.7 bits (98), Expect = 8e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || |||||||| || || || | ||| | || | | | Sbjct 25320957 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 25320898 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || | ||||| |||||||| || Sbjct 25320897 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGAAGGGTATCCCACCTGACCAG 25320838 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| | |||||| | || || | ||| | || Sbjct 25320837 CAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACGCTCTCAGACAACAAC 25320778 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| | | | |||||||| |||| Sbjct 25320777 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCACCTGCGAGGTGGCATTA 25320726 >seq9 Length=44311105 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| | || | | | Sbjct 14505647 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 14505706 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || | | ||| | ||| ||||||||||| || |||||||| |||| ||| || Sbjct 14505707 GACACCACTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACTTGACCAG 14505766 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| | |||||| | || || | ||| || || Sbjct 14505767 CAGTGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACGCT--CAGACTACAAC 14505824 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || || || || || |||| |||| | || | |||||||| |||| Sbjct 14505825 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTA 14505876 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 || || || ||| | ||||| || || |||| || || || | ||| | || | | | Sbjct 3708220 ATACAGATCTTTGTGAAGACCCTCACGGGCAGGACCATCACCCTTGAGGTCGAGCCCAGT 3708279 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| | | ||| | ||| ||||||||||| || || ||||| |||||||| || Sbjct 3708280 GATACCACTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 3708339 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| | |||||| | | ||| | ||| || || Sbjct 3708340 CAGTGTCTGATATTTGCCGGTAAACAGCTGGAGGATGGCGGCACACTCTCAGACTACAAC 3708399 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 ||||| ||||| || || |||| | || | || | ||||||| |||| Sbjct 3708400 ATTCAGAAAGAGTCCACCCTGCACCTAGTGCTGCGCCTGTGAGGTGGCATTA 3708451 >seq88 Length=9397244 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124541 GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGA 124600 ||| || ||| | ||||| || || ||||| || || || | || | || | | ||| Sbjct 1074345 GCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTAAGGTCGAGCCCAGTGA 1074286 Query 124601 TACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACA 124660 || ||| ||| | ||| ||||||||||| || || ||||| ||| ||||||| || Sbjct 1074285 CACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCATCTGATCAGCA 1074226 Query 124661 AAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATAT 124720 || || ||||| || ||||| | |||||| | || ||| | ||| || || || Sbjct 1074225 GCCTCTGATATTTGCTGGTAAACAGCTGGAGGATGGCCGCACACTCTCAGACTACAACAT 1074166 Query 124721 TCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || ||||| || || |||| | ||| | | | |||||||| |||| Sbjct 1074165 CCAGAAAGAGTCCACCCTGCACTGGGTGCTGCACCTGCGAGGTGGCATTA 1074116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755430635564800