Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq8 107 3e-18 seq101 102 1e-16 seq218 98.7 1e-15 seq134 95.1 2e-14 seq38 95.1 2e-14 seq1056 91.5 2e-13 seq3 91.5 2e-13 seq116 89.7 8e-13 seq85 84.2 3e-11 seq48 84.2 3e-11 >seq8 Length=45331107 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || |||| ||| | |||||| || ||| || || || || || || Sbjct 31945666 CCACCATGAAGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 31945608 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| |||| ||| || |||||| | ||||||||||||||||| ||||| Sbjct 31945607 CAGAGTACGTCCATCTTCTAGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGG 31945548 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 31945547 AATTCCTTCCTTATCCTG 31945530 >seq101 Length=8127303 Score = 102 bits (112), Expect = 1e-16 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117 |||||| || || | ||| | |||||| || ||| || || ||||| || || | ||| | Sbjct 4241888 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTATAGTCAGACAAAGTAC 4241946 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | ||| || | ||| || |||||||| |||| |||||||||||| ||||||||||||| Sbjct 4241947 AACAATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 4242006 Query 146178 CTTTATCTTG 146187 ||||||| || Sbjct 4242007 CTTTATCCTG 4242016 >seq218 Length=888862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| ||||| || || || || || || Sbjct 683674 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTTCTTCTGA-ATGTTGTAGTCAGA 683732 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 683733 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 683792 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 683793 AATTCCTTCCTTATCCTG 683810 >seq134 Length=5851302 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || || || Sbjct 3733386 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3733327 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 3733326 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3733267 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 3733266 ATTCCTTCCTTATCCTG 3733250 >seq38 Length=19171412 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || || || Sbjct 14820516 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 14820575 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 14820576 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 14820635 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 14820636 ATTCCTTCCTTATCCTG 14820652 >seq1056 Length=1934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || ||||||| |||| ||||||| | |||| || ||| ||| | |||| Sbjct 950 TTCCTTCTGGGTGTTATGAAAGAGTAGCTCCACGGTCTGGCTTGGCTGCAAAACACTTTA 891 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||||| | |||||||| || || || |||||||||||||||||||| || || | | | Sbjct 890 TTGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 831 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 |||| | || ||| | ||| | | || | | | ||| |||| | || | || | Sbjct 830 ATAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAAAGGGATCGAATTGCACAGCTCATTT 771 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| || || |||| Sbjct 770 GTGAACGGATTTTTTACCCAGAAAT 746 >seq3 Length=58292249 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || ||||| | |||| ||||||| | |||| || ||| ||| | |||| Sbjct 29419298 TTCCTTCTGGGTGTTACGGAAGAGTAGCTCCTCGGTCTGGCTTGGCTGAAAAACACTTTA 29419239 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||||| | |||||||| || || || ||||||||||||||||| || || || | | | Sbjct 29419238 TTGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAACGTTGGTGTTGCACTGT 29419179 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| | ||| | | || | || ||| |||| | ||| | || | Sbjct 29419178 TTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAAGATGATCGAATTGCACAACTCATTT 29419119 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| || || |||| Sbjct 29419118 GTGAACGGATTTTTTACCCAGAAAT 29419094 >seq116 Length=6990774 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | | ||| || || | ||| ||| |||| || ||| || || || || || || Sbjct 541731 CCACCACGACTTCTCAACACAAGATGAAAAATAGACTCCTTTTGA-ATGTTGTAGTCAGA 541673 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 541672 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 541613 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 541612 AATTCCTTCCTTATCCTG 541595 >seq85 Length=9676098 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 5982655 CCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 5982597 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || || || | || || |||||||| ||| |||||||||||| ||||| Sbjct 5982596 CAAAGTACGTCTGTCTTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTGATCAGGAGG 5982537 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 5982536 AATTCCTTCCTTATCCTG 5982519 >seq48 Length=16679805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 11416469 CCACCAGGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 11416527 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | | | || | ||| || |||||||| |||| ||||||||||| ||||| Sbjct 11416528 CAAAGTACATCCACCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 11416587 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 11416588 AATTCCTTCCTTATCCTG 11416605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743501436101120