Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq33 122 6e-23
seq71 116 2e-21
seq11 109 4e-19
seq9 105 4e-18
seq134 89.7 3e-13
seq38 87.8 1e-12
seq7 87.8 1e-12
seq88 86.0 4e-12
seq21 86.0 4e-12
seq77 84.2 1e-11
seq52 82.4 5e-11
seq2 82.4 5e-11
>seq33
Length=21137282
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| | ||| | ||| |||||||| | || |||||||| ||||||||||| ||
Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||||||||| || ||||||| |||||||||| ||
Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||| || ||||| ||| | || | || | || | | || ||
Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||||||| |||||||| || || ||||| |||||||||||
Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15373530
>seq71
Length=11673789
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| ||||||| | || |||||||| ||||||||||| |
Sbjct 72299 CCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAGGA 72240
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||||||||| || ||||||| |||||||||| |||
Sbjct 72239 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGGGG 72180
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||| || ||||| ||| | || | || | || | | || ||
Sbjct 72179 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCACC 72120
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| |||||||| || || |||||||||||||||||
Sbjct 72119 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72073
>seq11
Length=43820709
Score = 109 bits (120), Expect = 4e-19
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| |||||||||||| | || |||||||| ||||||| ||| ||
Sbjct 25320731 CCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAG 25320790
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| | || |||| ||| ||||| || || || || ||||||||||| ||
Sbjct 25320791 AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 25320850
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | || |||||| || ||| ||||| | || | || | || | | |||||
Sbjct 25320851 ATACCCTTCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 25320909
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| | |||||||| ||||| ||||| || |||||||||||||||||| ||
Sbjct 25320910 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATCTCT 25320961
>seq9
Length=44311105
Score = 105 bits (116), Expect = 4e-18
Identities = 162/226 (72%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 34169 CGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGA 34228
||||| | |||||||||||| | || |||||||| |||||||| || || | |||
Sbjct 19097347 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTGAGCG-TGA 19097289
Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288
|| | || |||| ||| |||| || || || || ||||||||||| || | | |
Sbjct 19097288 -GGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCC 19097230
Query 34289 TCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCAC 34347
|||||||| || ||| ||||| | || | || | || | | ||||| || |
Sbjct 19097229 TCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAG 19097171
Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|||||||| ||||| ||||| || |||||||||||||||||| ||
Sbjct 19097170 GGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCT 19097125
Score = 102 bits (112), Expect = 5e-17
Identities = 165/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | |||||||||||| | || || ||||| ||||||||||| ||
Sbjct 14505871 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 14505812
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| || ||| | || |||| ||| ||||| || || || || | ||||||||| | ||
Sbjct 14505811 CG-TG-CGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGGG 14505754
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | |||||||| || ||| ||||| | || | | | || | | |||||
Sbjct 14505753 ATACCTTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGAC 14505695
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| | |||||||| ||||| ||||| || |||||||||||||||||| ||
Sbjct 14505694 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCT 14505643
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | |||||| ||||| | || |||||||| ||||||||||| ||
Sbjct 3708446 CCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 3708387
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| | | | || |||| ||| || || || || || || | ||||||||| ||
Sbjct 3708386 AGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGGG 3708327
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| || ||| ||||| | || | | | ||| | | |||||
Sbjct 3708326 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCGAC 3708268
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| | |||||||| |||| ||||| || |||||||||||||| ||| ||
Sbjct 3708267 CTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTATCTCT 3708216
>seq134
Length=5851302
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || |||| ||| || || | |||| || ||||| ||||||||||| |||
Sbjct 3733386 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3733327
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| ||| | || |||| |||||||| || || || || | ||||| || ||
Sbjct 3733326 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3733267
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||| || ||||| ||||| || |||||| ||| | | ||| ||
Sbjct 3733266 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 3733207
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| || || || || |||||||| || ||||||||
Sbjct 3733206 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3733160
>seq38
Length=19171412
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231
|| |||| ||| || || | |||| || ||||| ||||||||||| |||| |||
Sbjct 14820525 AGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGT 14820584
Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291
| || |||| |||||||| || || || || | ||||| || || | | |||
Sbjct 14820585 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 14820644
Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351
|| || ||||| ||||| || |||||| ||| | | ||| || || | |||
Sbjct 14820645 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTG 14820704
Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||| || || || || |||||||| || ||||||||
Sbjct 14820705 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 14820742
>seq7
Length=46157118
Score = 87.8 bits (96), Expect = 1e-12
Identities = 154/225 (68%), Gaps = 12/225 (5%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||||||| | || |||||||| |||| |||||| || || ||| | ||
Sbjct 37069869 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTCGTAGTCAGAAAGAGTGCGGCCATC 37069928
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| |||||||||||| || ||||||| ||| |||||| |||| | || ||||| ||
Sbjct 37069929 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGGTGGTCGGCGGGGATGCCTTCCTTATC 37069988
Query 34297 --GG----------CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTC 34344
|| |||||| ||| | || | || | || | | || || ||
Sbjct 37069989 CTGGGATGCCTTCCTTATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTC 37070048
Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| |||||||| |||||||| || || ||||| | ||||||||
Sbjct 37070049 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGACAATCTGCAT 37070093
>seq88
Length=9397244
Score = 86.0 bits (94), Expect = 4e-12
Identities = 162/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| ||||||| ||| | || |||||||| ||||||||||| ||
Sbjct 1074121 CCACCTCGCAGGTGCAGCACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 1074180
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281
|| ||| | || |||| ||| || || || || || || ||||||| || || |||
Sbjct 1074181 AGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGGG 1074240
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| | ||||||||| || ||| ||||| | || | || | || | | ||||
Sbjct 1074241 -ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 1074298
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
| | | |||||||| ||||| ||||| || ||||||||||||||| || ||
Sbjct 1074299 CCTTAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCGTCTCT 1074351
>seq21
Length=27742158
Score = 86.0 bits (94), Expect = 4e-12
Identities = 91/119 (76%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || |||||||| |||||||| || ||
Sbjct 616587 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 616528
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||||| || |||| |||||||||||| || ||||||| |||||||||| ||||
Sbjct 616527 AGAGTGCGGTCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCG-CGGG 616470
>seq77
Length=10698663
Score = 84.2 bits (92), Expect = 1e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| | ||| | ||| |||||||| | || |||||||| ||||||||||| ||
Sbjct 10127652 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 10127593
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276
|| || | || |||| |||||||||||| || ||||||| ||||||||||
Sbjct 10127592 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCG 10127539
Score = 84.2 bits (92), Expect = 1e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288
||| | || |||| ||||||||| || || ||||||| |||||||||| ||| | ||
Sbjct 10127814 CGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCT 10127755
Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348
||||| || ||||| ||| | || | || | || | | || || ||||
Sbjct 10127754 TCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGG 10127695
Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| ||||| || || || ||||| |||||||||||
Sbjct 10127694 GTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 10127654
>seq52
Length=16356641
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34180 CACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTC 34239
||| || || | |||| || ||||| ||||||||||| |||| ||| | || ||
Sbjct 10619085 CACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTC 10619026
Query 34240 CAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGC 34299
|| |||||||| || || || || | ||||| || || | | ||||| ||
Sbjct 10619025 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCCTG 10618966
Query 34300 TATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359
||||| ||||| || |||||| ||| | | ||| || || | |||||||| ||
Sbjct 10618965 GATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTT 10618906
Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || |||||||| || ||||||||
Sbjct 10618905 CCCCGTAAGGGTTTTCACGAAAATCTGCAT 10618876
>seq2
Length=71252344
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|||||||| |||| |||||| || | || | || | || |||||||||||| |||
Sbjct 43675540 TCTTTCTGGATGTCGTAGTCAGAAGGAGTGTGGCCATCTTTCAGCTGCTTGCCTGCAAAA 43675481
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACG-CTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||||||| |||||| ||| ||| | | |||| ||| || |||| ||| | |||
Sbjct 43675480 ATGAGCCTCTGCTGTTCGGTGGGGATGCCTCT-CTTATCCTGGATCTCAGCCTTCACATC 43675422
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
|| | || | | || || |||| |||||||| ||||| || || || |||||
Sbjct 43675421 TTAGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 43675362
Query 34378 AAAGATCTGCAT 34389
||| ||||||||
Sbjct 43675361 AAATATCTGCAT 43675350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323061424036160
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