Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq33 122 6e-23 seq71 116 2e-21 seq11 109 4e-19 seq9 105 4e-18 seq134 89.7 3e-13 seq38 87.8 1e-12 seq7 87.8 1e-12 seq88 86.0 4e-12 seq21 86.0 4e-12 seq77 84.2 1e-11 seq52 82.4 5e-11 seq2 82.4 5e-11 >seq33 Length=21137282 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| |||||||| | || |||||||| ||||||||||| || Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||||||||| || ||||||| |||||||||| || Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | || | || | | || || Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||| |||||||| || || ||||| ||||||||||| Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15373530 >seq71 Length=11673789 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| ||||||| | || |||||||| ||||||||||| | Sbjct 72299 CCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAGGA 72240 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 72239 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGGGG 72180 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | || | || | | || || Sbjct 72179 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCACC 72120 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||||||||||||||| Sbjct 72119 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72073 >seq11 Length=43820709 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| |||||||||||| | || |||||||| ||||||| ||| || Sbjct 25320731 CCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAG 25320790 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||| ||||| || || || || ||||||||||| || Sbjct 25320791 AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 25320850 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || |||||| || ||| ||||| | || | || | || | | ||||| Sbjct 25320851 ATACCCTTCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 25320909 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| ||||| || |||||||||||||||||| || Sbjct 25320910 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATCTCT 25320961 >seq9 Length=44311105 Score = 105 bits (116), Expect = 4e-18 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 34169 CGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGA 34228 ||||| | |||||||||||| | || |||||||| |||||||| || || | ||| Sbjct 19097347 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTGAGCG-TGA 19097289 Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 || | || |||| ||| |||| || || || || ||||||||||| || | | | Sbjct 19097288 -GGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCC 19097230 Query 34289 TCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCAC 34347 |||||||| || ||| ||||| | || | || | || | | ||||| || | Sbjct 19097229 TCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAG 19097171 Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 |||||||| ||||| ||||| || |||||||||||||||||| || Sbjct 19097170 GGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCT 19097125 Score = 102 bits (112), Expect = 5e-17 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||| || Sbjct 14505871 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 14505812 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || ||| | || |||| ||| ||||| || || || || | ||||||||| | || Sbjct 14505811 CG-TG-CGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGGG 14505754 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||| ||||| | || | | | || | | ||||| Sbjct 14505753 ATACCTTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGAC 14505695 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| ||||| || |||||||||||||||||| || Sbjct 14505694 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCT 14505643 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| ||||| | || |||||||| ||||||||||| || Sbjct 3708446 CCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 3708387 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || |||| ||| || || || || || || | ||||||||| || Sbjct 3708386 AGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGGG 3708327 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| || ||| ||||| | || | | | ||| | | ||||| Sbjct 3708326 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCGAC 3708268 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| |||| ||||| || |||||||||||||| ||| || Sbjct 3708267 CTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTATCTCT 3708216 >seq134 Length=5851302 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || |||| ||| || || | |||| || ||||| ||||||||||| ||| Sbjct 3733386 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3733327 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || |||| |||||||| || || || || | ||||| || || Sbjct 3733326 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3733267 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||||| || |||||| ||| | | ||| || Sbjct 3733266 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 3733207 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || |||||||| || |||||||| Sbjct 3733206 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3733160 >seq38 Length=19171412 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 || |||| ||| || || | |||| || ||||| ||||||||||| |||| ||| Sbjct 14820525 AGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGT 14820584 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || |||| |||||||| || || || || | ||||| || || | | ||| Sbjct 14820585 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 14820644 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 || || ||||| ||||| || |||||| ||| | | ||| || || | ||| Sbjct 14820645 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTG 14820704 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||| || |||||||| Sbjct 14820705 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 14820742 >seq7 Length=46157118 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/225 (68%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || |||||||| |||| |||||| || || ||| | || Sbjct 37069869 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTCGTAGTCAGAAAGAGTGCGGCCATC 37069928 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || ||||||| ||| |||||| |||| | || ||||| || Sbjct 37069929 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGGTGGTCGGCGGGGATGCCTTCCTTATC 37069988 Query 34297 --GG----------CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTC 34344 || |||||| ||| | || | || | || | | || || || Sbjct 37069989 CTGGGATGCCTTCCTTATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTC 37070048 Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| |||||||| || || ||||| | |||||||| Sbjct 37070049 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGACAATCTGCAT 37070093 >seq88 Length=9397244 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| ||||||| ||| | || |||||||| ||||||||||| || Sbjct 1074121 CCACCTCGCAGGTGCAGCACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 1074180 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| ||| || || || || || || ||||||| || || ||| Sbjct 1074181 AGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGGG 1074240 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||||||| || ||| ||||| | || | || | || | | |||| Sbjct 1074241 -ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 1074298 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | | | |||||||| ||||| ||||| || ||||||||||||||| || || Sbjct 1074299 CCTTAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCGTCTCT 1074351 >seq21 Length=27742158 Score = 86.0 bits (94), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || |||||||| |||||||| || || Sbjct 616587 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 616528 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||||| || |||| |||||||||||| || ||||||| |||||||||| |||| Sbjct 616527 AGAGTGCGGTCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCG-CGGG 616470 >seq77 Length=10698663 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| |||||||| | || |||||||| ||||||||||| || Sbjct 10127652 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 10127593 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 || || | || |||| |||||||||||| || ||||||| |||||||||| Sbjct 10127592 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCG 10127539 Score = 84.2 bits (92), Expect = 1e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 ||| | || |||| ||||||||| || || ||||||| |||||||||| ||| | || Sbjct 10127814 CGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCT 10127755 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 ||||| || ||||| ||| | || | || | || | | || || |||| Sbjct 10127754 TCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGG 10127695 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||| || || || ||||| ||||||||||| Sbjct 10127694 GTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 10127654 >seq52 Length=16356641 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34180 CACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTC 34239 ||| || || | |||| || ||||| ||||||||||| |||| ||| | || || Sbjct 10619085 CACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTC 10619026 Query 34240 CAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGC 34299 || |||||||| || || || || | ||||| || || | | ||||| || Sbjct 10619025 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCCTG 10618966 Query 34300 TATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||||| ||||| || |||||| ||| | | ||| || || | |||||||| || Sbjct 10618965 GATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTT 10618906 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || |||||||| || |||||||| Sbjct 10618905 CCCCGTAAGGGTTTTCACGAAAATCTGCAT 10618876 >seq2 Length=71252344 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||| |||||| || | || | || | || |||||||||||| ||| Sbjct 43675540 TCTTTCTGGATGTCGTAGTCAGAAGGAGTGTGGCCATCTTTCAGCTGCTTGCCTGCAAAA 43675481 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACG-CTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||||| |||||| ||| ||| | | |||| ||| || |||| ||| | ||| Sbjct 43675480 ATGAGCCTCTGCTGTTCGGTGGGGATGCCTCT-CTTATCCTGGATCTCAGCCTTCACATC 43675422 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | || | | || || |||| |||||||| ||||| || || || ||||| Sbjct 43675421 TTAGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 43675362 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 43675361 AAATATCTGCAT 43675350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323061424036160