Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq37 262 4e-65 seq132 102 8e-17 >seq37 Length=19344684 Score = 262 bits (290), Expect = 4e-65 Identities = 522/767 (68%), Gaps = 16/767 (2%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| ||| ||| | ||||| | || |||||||| ||||| Sbjct 211285 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAA 211344 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTT----- 16027 ||| || || |||||||| | ||||||||| |||||||| ||||| ||||| | | Sbjct 211345 GAAGTTAGTGTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCT 211404 Query 16028 GAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATA 16087 ||| || | | | | |||| ||||| || | ||| || |||||||| || || Sbjct 211405 GAA-AACCCTGCTAA----AACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATG 211459 Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147 || || ||||||| | || ||||| || || | || ||||| | || || || | Sbjct 211460 TATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGG 211519 Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGG 16206 || | | ||| || ||| || || ||||| ||||||||| | || | | | || Sbjct 211520 AACTCCTGTTCCATCCGAACAGCACTGATAATTATTTCTCTTACT-CTCTCCTCTGATGG 211578 Query 16207 AGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCT 16266 || || | |||||| ||||| | ||||| |||||||| || || || || || || Sbjct 211579 TTTGTGTACTTGGTGTTTGAACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCT 211638 Query 16267 ACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAA 16326 | | | || || |||||||| || || ||||| ||||||||||| || | ||| || Sbjct 211639 GCCAGTAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAA 211698 Query 16327 TATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCG 16386 ||| | ||||| |||||||||||||| || ||||| ||||| ||||| || | | | Sbjct 211699 TATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTG 211758 Query 16387 CTCACCGTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttgt 16444 ||||| || || || ||| | | | | ||| ||||||| ||| || | Sbjct 211759 TTCACCATAGGTAGCCTCTTTGTCC--CCAACCCAGAGCAAGGCCCAATCTGCCTTCTTC 211816 Query 16445 ttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAA 16504 || ||||| ||| | || || ||||| || | | | | |||| ||| |||| Sbjct 211817 TTGACACAAGGCATCGTTTCAATAGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTT 211876 Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || ||||| || || || | |||||| ||||| ||||| || || | ||| || || || Sbjct 211877 ATGTAAGTGTCAATAAGGAGACTATATATTTCAGAATGTATGTTTTTCATGGCCATTTGG 211936 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 || ||||| || || ||||| | || || ||||| | ||| | || | ||| Sbjct 211937 AAGCCATAGAAACAGTGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAG 211996 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTG 16671 ||||| || ||||| |||| || |||||||| || || || | ||| Sbjct 211997 TTTTCATTTACTATGCCATAACTTGCTGCAAAGAAAGCCAGAACGTG 212043 >seq132 Length=5918258 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || || ||| | | | || |||||||| | Sbjct 989979 TTTAAAAATCTGCATCCAAGGTGAAGACGTTGTCTGTGGTTTCTGCCATAACTGCAAAGC 989920 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||||||||||| ||||| |||| Sbjct 989919 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATGTTTT 989860 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 989859 CCATAAAATCAAAAGGATTTTCTG 989836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462496471159600