Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq32 1480 0.0 seq2 136 3e-27 >seq32 Length=21366645 Score = 1480 bits (1640), Expect = 0.0 Identities = 1351/1698 (80%), Gaps = 49/1698 (3%) Strand=Plus/Plus Query 107098 GCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA---------GGGTCTT--AGG 107146 ||| ||||| || ||||||| ||||||| |||| |||| ||| ||| ||| Sbjct 18736474 GCTAGTTTGTAGGGTCAGGTTGCAGATGTTCATCAACAACAGATGTAAGGGGCTTGTAGG 18736533 Query 107147 CAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGGAG 107206 |||| ||| ||| |||||| | || | |||| || | ||| ||||| | |||| Sbjct 18736534 CAGGTCTTTACTAAGGATACTGATCCAGGTAAGAAATAGGT-TTTGCCATCCGTTTGGAA 18736592 Query 107207 TTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAA 107260 | |||||||||||| |||| ||| |||||||| || |||||||||||||||||||| Sbjct 18736593 TGGAACTTGATGTTTCTGGGAATGATTGGTTTGTAACTAGAGGCATTTTGTTCTGTCCAA 18736652 Query 107261 GGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCATGA 107316 ||||| || |||||| | || ||||||| || ||| |||| |||||||| | ||| Sbjct 18736653 GGATCCTGTCATCCTCCTCATTCCCTGTGCTCAGTCTCCACCTG-TCTCCCATTCTGTGA 18736711 Query 107317 AGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCT 107376 ||||| | ||||||| || || ||| || ||| | |||||||||||||||| | Sbjct 18736712 CGATGGTTCAATGGAAGA-GA--CTCTGCTGGCAGCATTACTTGTGGGCCCTGGGCTGTT 18736768 Query 107377 ATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATT 107436 | |||||||||||| |||| |||||| |||||| |||||||| || ||||| || Sbjct 18736769 ACATGCTGCTGGCCATTGTGGCTCTGAAACTTTCTCTCAGGTTGAAGTGTGACTCTGACC 18736828 Query 107437 CCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATA 107496 ||||| ||||||||||||||| || || || ||| |||||||| | || ||||||| | Sbjct 18736829 ACTTGGGTCTGGAGTCCAGGGAATTTCAAAGCCAGTACTGTAGGAATATCTTGTACAGTT 18736888 Query 107497 GCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGG 107556 |||||||||||||||||| || || ||| ||||||| | |||| ||||||||||| | Sbjct 18736889 CCCTGAAGCTGCCAGCAAACAGGTCTATCGACTGTTCAGCAGTCACCCGAGGGGACCAAG 18736948 Query 107557 AAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCA 107616 |||| ||| | ||||| | || |||||||| || ||||| |||||| |||| ||| Sbjct 18736949 AAGCGGTGTTGCAGGCTATTCTGAGTAACCTGGAGGTCAAGAAGAAGCGGGAGCCTTTCA 18737008 Query 107617 CTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGT 107676 | | |||| | |||||| | |||||||||||||||||||| ||||| ||||||||| Sbjct 18737009 CAGACACCCACTACCTCTCGCTCACCAGAGACTGTGAGCGCTTTAAGGCTGAAAGGAAGT 18737068 Query 107677 TCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGG 107736 ||||||||||||||||||| ||||||||| | || ||||| ||||| ||||| |||||| Sbjct 18737069 TCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCATACTCCATGGTGA 18737128 Query 107737 TCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACA 107796 | || ||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| Sbjct 18737129 TTCACGAGAAGATTGAAAACTTTGAAAGGCTCCTGCGAGCGGTGTATGCCCCTCAGAACA 18737188 Query 107797 TATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCA 107856 ||||||| |||||||||||| |||||||||||| ||||||||| |||| ||||| || | Sbjct 18737189 TATACTGCATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAAAGGCAGTCAAAGCAA 18737248 Query 107857 TTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCT 107916 ||| || |||||||| || |||||||| ||||||||| |||| | |||||||||||||| Sbjct 18737249 TTACCTCATGCTTCCCAAACGTCTTCATAGCCAGTAAGCTGGTTCGGGTGGTTTATGCCT 18737308 Query 107917 CCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC 107976 |||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||||| Sbjct 18737309 CCTGGTCCAGGGTGCAAGCTGATCTCAACTGCATGGAAGACTTGCTTCAGAGCTCAGTGC 18737368 Query 107977 CATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGA 108036 ||||||| ||||| ||||||||||| ||||| ||||| || ||||||| ||||| |||| Sbjct 18737369 CATGGAAATACTTCCTGAATACATGTGGGACGGACTTTCCTATAAAGAGCAATGAAGAGA 18737428 Query 108037 TGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTG 108096 |||||| ||| |||||||||||||| || | ||| ||||||||| | ||||||||| ||| Sbjct 18737429 TGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGTATGGAGACAGAGGTACCTACTG 18737488 Query 108097 AGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCCTA 108153 ||| ||||||||| |||||||||||||||| |||| ||| |||| | | ||| | Sbjct 18737489 AGTTCAAAAAAAACCGCTGGAAATACCGCTTTGAGGTAGTGGGAGACCAATTACACCTAA 18737548 Query 108154 CCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 || | |||| |||||| ||||||||| |||| || | |||||||||||||||| ||| Sbjct 18737549 CCGGAAAGAAGAAGGATCCTCCCCCTTTTAATGTAACTGTGTTCACAGGGAATGCATATA 18737608 Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGG 108273 | ||||| || |||| |||||||||||||| || | || |||||||||||| |||| Sbjct 18737609 TCGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAATCCTAAATCCCAACAACTGA 18737668 Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 18737669 TTGAATGGGTAAAAGACACCTATAGCCCTGACGAACACCTCTGGGCCACCCTGCAGCGTG 18737728 Query 108334 CTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTG 108393 | ||||||||||||||||||||| ||||| ||||||| ||||||||||||||| | Sbjct 18737729 CATGGTGGATGCCTGGCTCTGTTCCCCACCACCGCAAGTATGACATCTCAGACATGATTT 18737788 Query 108394 CCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTT 108453 |||| |||||||| |||||||||||| || || ||||| |||| | ||| || |||| Sbjct 18737789 CCATTGCCAGGCTGGTCAAGTGGCAGAGTCATGAAGGAGACATCAGTAAGGGTGCCCCTT 18737848 Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513 ||| || |||||||||||||| | | |||| ||||| | || ||||| |||||| || Sbjct 18737849 ATGGCCCTTGCTCTGGAATCCACCAGCGGGCTATCTGTGTGTATGGGGCTGGGGACTTGC 18737908 Query 108514 ACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATA 108573 | ||||| || || ||||||||||| ||||| |||||||||||||| | ||| ||||||| Sbjct 18737909 ATTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGATA 18737968 Query 108574 ACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTT 108633 | || |||||||| ||||||||||||||| |||||||| || ||||||||| ||||| Sbjct 18737969 GTGCTCTTCAGTGCTTGGAAGAGTACCTACGTTATAAGGCCTTCCATGGGACTGCACTTT 18738028 Query 108634 GAGCTGCA------------------CTGTGGGCCAGGGAC-TGTGCCAACATGCCCAGG 108674 ||| ||| ||||||| || | || |||| ||||||| | | Sbjct 18738029 GAGACGCACTATAAGAGCATTGCTACCTGTGGGGCAAGAACATGTGTAAACATGCTCGGA 18738088 Query 108675 GCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGG 108734 | | |||| || |||| ||||||| | | |||||| || ||||| | |||||||| ||| Sbjct 18738089 ACTTGCTGGGACAGTGT-GGGTGGGAGGCCAGGGCTTTGCAATCCGTAGCATCCCCTAGG 18738147 Query 108735 GTCAGAGGGCTGCTTTGA 108752 | || ||||| || ||| Sbjct 18738148 ATGAGGGGGCTCCTGTGA 18738165 >seq2 Length=71252344 Score = 136 bits (150), Expect = 3e-27 Identities = 573/897 (64%), Gaps = 51/897 (6%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 67569601 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCGTATTCTATCGTGGTTCATCACAAG 67569660 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 67569661 ATCGAAATGCTTGACAGGCTACTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 67569720 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| ||| ||| ||| || | | || || || | || |||| |||| Sbjct 67569721 CATGTGGACAGGAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATTGCTTCC 67569777 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| ||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 67569778 TGTTTCAGTAATGTCTTCGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 67569837 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982 | || || |||||||| ||||| ||| | ||| | || | | | || || | |||| Sbjct 67569838 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACCT-CTAC-GCAATGAGGGCAAATTGGA 67569895 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||| | | ||| || |||| || || || || || ||||| || || ||| Sbjct 67569896 AGTACCTGATCAATCTTTGTGGGATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCA 67569955 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAGT 108099 | |||||| |||||| ||| | |||| |||| | || | | || || | Sbjct 67569956 GGAAGCTCAAGTTGTTGATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCAA-- 67570013 Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATGAGG---------------TGACAGACACAC 108144 || || | | |||||| | || ||||||| ||||| ||||| Sbjct 67570014 -TAAGGAAGAAAGGTGGAAAAAGCGGTATGAGGTCATTAATGGAAAGTTGACAAACACAG 67570072 Query 108145 TGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGA 108204 | || ||| || | ||||| | || | |||| | || | || | Sbjct 67570073 GG------ACTGTCAAAAT---GCTTCCTCCGCTGGAAA---CACCCCTTTTTTCTGGCA 67570120 Query 108205 ATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCC 108264 |||||| ||||||| | | | | | ||| |||| || | || ||| || Sbjct 67570121 GTGCCTACTTTGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATCC 67570180 Query 108265 AAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCC 108324 ||| | | ||||||| ||||||| |||||||| || || | |||||||| ||| Sbjct 67570181 AAAAGTTTATGGAATGGGCGCAAGACACATATAGCCCTGATGAGTATCTCTGGGCTACCA 67570240 Query 108325 TTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGT---TCCTAGCCACCCCAAGTATCACATC 108380 | ||| | | | | || | | || ||||| | | ||||||| ||||| | | Sbjct 67570241 TCCAGAG-GATTCCTGAAGTCCCGGGCTCACTCTCTGCTAGCCA---TAAGTACGATTTG 67570296 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 || |||||| || | |||||| | ||||||||||||||| ||||| ||||| | Sbjct 67570297 TCTGACATGCAGGCGGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTTC 67570356 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 | ||| || || || |||||||| || | || | | | | ||| ||| ||| Sbjct 67570357 AGGGGTGCTCCCTACCCACCCTGCGACGGGGTGCACGTGCGCTCGGTGTGCGTTTTCGGA 67570416 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || || ||| || ||||||| || | || || ||||| || || || ||||||||| Sbjct 67570417 GCTGGCGACTTGAACTGGATGCTGCGCAAGCACCACCTGTTTGCCAATAAGTTTGAC 67570473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348257399203164