Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq22 127 2e-24 >seq22 Length=27210278 Score = 127 bits (140), Expect = 2e-24 Identities = 262/388 (68%), Gaps = 4/388 (1%) Strand=Plus/Minus Query 20389 GATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT 20448 ||| | ||| | ||||| ||||| ||||| ||| || ||||| || ||||| | || Sbjct 26912835 GATCTTCCTCTGATGGCGTTGCCCCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 26912776 Query 20449 AATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTC 20508 | ||| |||| ||||| |||| || |||| || |||| || ||| | |||||| Sbjct 26912775 AGTGAGCTGTCCTGTCAGCTGTACCAGAGATCAAGAGACGTGGGCCTAGGTATGCCTTTC 26912716 Query 20509 AATATTGCAAGTTATGCGCTGCTTACGTATATGAT--TGCACATGTTACAGATTTAAAAA 20566 || || | || || || ||||| ||||| ||||| ||||||| || | | || Sbjct 26912715 AACATCACCAGCTACGCCCTGCTCACGTACATGATCATGCACATC--ACGGGCCTGAAGC 26912658 Query 20567 CGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTT 20626 | ||||| || || || | | ||||| || ||||||||||| ||||| || || || Sbjct 26912657 CAGGTGATTTTGTACATGCTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCCAC 26912598 Query 20627 TAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTG 20686 | ||| | ||| | || ||| | || ||||||| || ||| ||||| | Sbjct 26912597 TGAAAATTCAGCTTCAGTGAGAACGCAGACCTTTCCCAAAGCTCAAGATTCTTCGAAAAG 26912538 Query 20687 TTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATA 20746 || | | ||| | || || |||||||| || ||| | | ||||| || |||| || Sbjct 26912537 TTGAGAAAATTGATGACTTCAAAGCTGAAGACTTTAAGGTTGAAGGGTACAATCTGCACC 26912478 Query 20747 ATTCAATTCCAATGGAAATGTCTGTTTA 20774 | ||| |||||||||| ||||||| Sbjct 26912477 CAACTATTAAAATGGAAATGGCTGTTTA 26912450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399170932462270