Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq9 120 2e-22
seq11 116 3e-21
seq88 107 2e-18
seq59 107 2e-18
seq71 104 2e-17
seq97 100 2e-16
seq33 96.9 3e-15
seq86 91.5 1e-13
seq6 89.7 4e-13
seq100 86.0 5e-12
seq77 82.4 6e-11
>seq9
Length=44311105
Score = 120 bits (132), Expect = 2e-22
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||| || | | |||| |||||| ||| ||||||||| ||||||||||| |
Sbjct 14505872 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC--T 14505815
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || ||||| ||||| ||||| ||||||| | ||| ||||| | ||
Sbjct 14505814 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGG 14505755
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| ||| |||||||| |||||| || || | | | |||| | ||| ||
Sbjct 14505754 GATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGAC 14505695
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| | ||| || ||||||||||| || |||||||||||||| |||||
Sbjct 14505694 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647
Score = 118 bits (130), Expect = 8e-22
Identities = 152/209 (73%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||| ||||| |||||||| || | || | | | || |||
Sbjct 19097335 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTC--TGAGCGTGAGGCCATCCTCC 19097278
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| | ||| ||||||| ||||| ||||| || || | |||||||||||| |
Sbjct 19097277 AGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 19097218
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | | |||| | ||| ||||| | ||| || ||||||
Sbjct 19097217 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 19097158
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || |||||||||||||| |||||
Sbjct 19097157 CCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||| || | | || | |||||| ||| ||| |||||||||||||||||
Sbjct 3708447 GCCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 3708388
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
||| || | || ||||| ||||| ||||| ||||||| | ||| ||||| || ||
Sbjct 3708387 GAGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGG 3708328
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||||||| |||||| || || | | | | || | ||| ||
Sbjct 3708327 GATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCGAC 3708268
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| | ||| || ||| ||||||| || |||||||||||||| || ||
Sbjct 3708267 CTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220
>seq11
Length=43820709
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||| ||||| ||||||| ||| || ||| | || |||
Sbjct 25320749 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGCGTGCGGCCATCCTCC 25320808
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| ||||| ||||||| ||||| ||||| || || | ||||| |||||| |
Sbjct 25320809 AGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTTCTTGTCTTGA 25320868
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | | |||| | ||| ||||| | ||| || ||||||
Sbjct 25320869 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 25320928
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || |||||||||||||| |||||
Sbjct 25320929 CCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957
>seq88
Length=9397244
Score = 107 bits (118), Expect = 2e-18
Identities = 148/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||| ||||||| ||| ||| ||||| ||||||||||| ||| ||| | || |||
Sbjct 1074139 ACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTGCGGCCATCCTCC 1074198
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || ||||||| |||| || || | || | |||||||||||| |
Sbjct 1074199 AGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGGGATACCCTCCTTGTCTTGA 1074258
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | | |||| | ||| |||| | ||| || ||||||
Sbjct 1074259 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTTAAGGGTGATGGTCTTG 1074318
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGC 45334
||||| || |||||||||||||| |||
Sbjct 1074319 CCCGTGAGGGTCTTCACAAAGATCTGC 1074345
>seq59
Length=14671897
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| || ||| ||||| ||||||||||| ||| ||| | || |||
Sbjct 11745334 ACCAAGTGCAGAATGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 11745275
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| ||||| || ||||| | ||| ||||| ||||| | || ||||||||
Sbjct 11745274 AGCTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 11745215
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | | | |||| | ||| ||||| | ||| || |||||
Sbjct 11745214 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTA 11745155
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| || || |||||||| ||||| |||||
Sbjct 11745154 CTGGTAAGGGTCTTCACGAAGATCTGCAT 11745126
Score = 105 bits (116), Expect = 5e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||||||||||||||| || | ||| | || ||||| ||
Sbjct 11745101 GTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGGTTGCGCCCATCTTCCAGCTG 11745042
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||| | ||| || ||||| | ||||||||| ||||| | || |||||||| || ||
Sbjct 11745041 TTTCCTGGCAAAGATCAATCTCTGTTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTT 11744982
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
| ||| || | | | |||| | ||| ||||| | ||| || ||||| | ||
Sbjct 11744981 TGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACTGGT 11744922
Query 45313 CAGAGTCTTCACAAAGAT 45330
||||||||||| ||||||
Sbjct 11744921 CAGAGTCTTCAGAAAGAT 11744904
>seq71
Length=11673789
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| |||| | | |||| || ||| || ||| ||||| |||||||||||
Sbjct 72300 GCCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAGG 72241
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || ||||| || || || || || || | || ||| |||||| | ||
Sbjct 72240 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGGG 72181
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| || ||||| ||| || || ||| || | | | |||| | | ||||||
Sbjct 72180 GATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCAC 72121
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||||| ||| || |||||||| ||||| |||||||||||||| ||||| |||
Sbjct 72120 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 72069
>seq97
Length=8594300
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||| ||||| |||||| |||| || || | | |||
Sbjct 7807795 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCAGCCATGCTCC 7807736
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| | ||| || |||| | ||| ||||| || | | |||||||||||| |
Sbjct 7807735 AGCTGTTTGCTGGCAAACATCAGACACTGCTGGTCAGGTAGGATACCCTCCTTGTCTTGA 7807676
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | | |||| ||| ||| ||||| | ||| || ||||||
Sbjct 7807675 ATTTTGGCTTTGACATTCTCAATGGTGTCACCAGTCTCGACCTCAAGGGTGATGGTCTTG 7807616
Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330
||||| ||||||||||| |||||
Sbjct 7807615 CCCGTGAGAGTCTTCACTAAGAT 7807593
>seq33
Length=21137282
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| ||||||| | | |||| |||||| || ||| ||||| |||||||||||
Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| | | | || ||||| || || || || || || | || ||| |||||||||||
Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || ||||| ||| || || ||| || | | | |||| | |||||||
Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|||| || || |||||||| ||||| |||||||| ||||| ||||| |||
Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 15373526
>seq86
Length=9530769
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||| |||| ||||||||||| || || | || |||
Sbjct 8872721 ACCAGGTGCAGGGTGGACTC--TCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCC 8872664
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| | ||| || |||| |||| ||||| || || | |||||||||||| |
Sbjct 8872663 AGCTGTTTGCTGGCAAACATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 8872604
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | | |||| | | | ||||| | | | || ||||||
Sbjct 8872603 ATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCACGACCTCAAGGATGATGGTCTTG 8872544
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || |||||||||||||| |||||
Sbjct 8872543 CCTGTGAGGGTCTTCACAAAGATCTGCAT 8872515
>seq6
Length=49021937
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||| ||||| ||||||||||| ||| || | || ||||| || |||||||| ||
Sbjct 37593726 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCACCCATCTTCCAGCTGCTTTCCGGCAAA 37593667
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||| | | ||||| ||| | | || |||| |||| || ||| ||| ||
Sbjct 37593666 GATCAACCTCCGCTGGTCAGGAAGGATGCCTTCCTGGTCCTGGATCTTTGCCTTGACGTT 37593607
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | | |||| | ||| ||||| | ||| || ||||| || ||||| ||||||||
Sbjct 37593606 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCAC 37593547
Query 45325 AAAGATTTGCAT 45336
|| || |||||
Sbjct 37593546 TAATATCTGCAT 37593535
>seq100
Length=8175301
Score = 86.0 bits (94), Expect = 5e-12
Identities = 156/226 (69%), Gaps = 3/226 (1%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||| || | | |||| |||||| ||| || | ||| ||||| |||||
Sbjct 5960251 GCCACCTCCCAGGCGCAGCACCAGGTGCAG-GTGGACTGTTGCTGGATGTTTTAGTCTGA 5960309
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
||| ||| | || ||||| ||||| | | ||| || ||||| ||||| || ||
Sbjct 5960310 GAGT--GCGGCCATCCTCCAGCTGTTTGCTAACACATACCAGACGCTGCTGGTCAGGTGG 5960367
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||||||| |||||| || || | | ||| |||| | || ||
Sbjct 5960368 AATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAACGATGTCACTGGGCTTGAC 5960427
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGC 45334
||| | ||| || ||||||||| | || |||||||||||||| |||
Sbjct 5960428 CTCAAGGGTGATAGTCTTGCCCATGAGGGTCTTCACAAAGATCTGC 5960473
>seq77
Length=10698663
Score = 82.4 bits (90), Expect = 6e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241
|| ||||| || || ||||| || || | || ||| |||||||| || | || |||||
Sbjct 10127808 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTA 10127749
Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301
||| || || ||| || | | | |||| | ||||||||||| ||| ||
Sbjct 10127748 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 10127689
Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344
|||||||| ||||| |||||||| ||||| ||||| |||||
Sbjct 10127688 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATACCGCCTC 10127646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395062266966406
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