Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq9 120 2e-22 seq11 116 3e-21 seq88 107 2e-18 seq59 107 2e-18 seq71 104 2e-17 seq97 100 2e-16 seq33 96.9 3e-15 seq86 91.5 1e-13 seq6 89.7 4e-13 seq100 86.0 5e-12 seq77 82.4 6e-11 >seq9 Length=44311105 Score = 120 bits (132), Expect = 2e-22 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| ||||||||| ||||||||||| | Sbjct 14505872 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC--T 14505815 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| ||||| ||||| ||||||| | ||| ||||| | || Sbjct 14505814 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGG 14505755 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| |||||||| |||||| || || | | | |||| | ||| || Sbjct 14505754 GATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGAC 14505695 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||||||||||| || |||||||||||||| ||||| Sbjct 14505694 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647 Score = 118 bits (130), Expect = 8e-22 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||||| || | || | | | || ||| Sbjct 19097335 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTC--TGAGCGTGAGGCCATCCTCC 19097278 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| | ||| ||||||| ||||| ||||| || || | |||||||||||| | Sbjct 19097277 AGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 19097218 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 19097217 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 19097158 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||||||||||||| ||||| Sbjct 19097157 CCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | || | |||||| ||| ||| ||||||||||||||||| Sbjct 3708447 GCCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 3708388 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| || | || ||||| ||||| ||||| ||||||| | ||| ||||| || || Sbjct 3708387 GAGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGG 3708328 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || || | | | | || | ||| || Sbjct 3708327 GATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCGAC 3708268 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||| ||||||| || |||||||||||||| || || Sbjct 3708267 CTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220 >seq11 Length=43820709 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| ||||||| ||| || ||| | || ||| Sbjct 25320749 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGCGTGCGGCCATCCTCC 25320808 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| ||||||| ||||| ||||| || || | ||||| |||||| | Sbjct 25320809 AGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTTCTTGTCTTGA 25320868 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 25320869 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 25320928 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||| ||||| Sbjct 25320929 CCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957 >seq88 Length=9397244 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||| ||||||| ||| ||| ||||| ||||||||||| ||| ||| | || ||| Sbjct 1074139 ACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTGCGGCCATCCTCC 1074198 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || ||||||| |||| || || | || | |||||||||||| | Sbjct 1074199 AGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGGGATACCCTCCTTGTCTTGA 1074258 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | |||| | ||| |||| | ||| || |||||| Sbjct 1074259 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTTAAGGGTGATGGTCTTG 1074318 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGC 45334 ||||| || |||||||||||||| ||| Sbjct 1074319 CCCGTGAGGGTCTTCACAAAGATCTGC 1074345 >seq59 Length=14671897 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||| ||||| ||||||||||| ||| ||| | || ||| Sbjct 11745334 ACCAAGTGCAGAATGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 11745275 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||| | ||| ||||| ||||| | || |||||||| Sbjct 11745274 AGCTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 11745215 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||| ||||| | ||| || ||||| Sbjct 11745214 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTA 11745155 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || |||||||| ||||| ||||| Sbjct 11745154 CTGGTAAGGGTCTTCACGAAGATCTGCAT 11745126 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||||||||||||||| || | ||| | || ||||| || Sbjct 11745101 GTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGGTTGCGCCCATCTTCCAGCTG 11745042 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| | ||| || ||||| | ||||||||| ||||| | || |||||||| || || Sbjct 11745041 TTTCCTGGCAAAGATCAATCTCTGTTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTT 11744982 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | |||| | ||| ||||| | ||| || ||||| | || Sbjct 11744981 TGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACTGGT 11744922 Query 45313 CAGAGTCTTCACAAAGAT 45330 ||||||||||| |||||| Sbjct 11744921 CAGAGTCTTCAGAAAGAT 11744904 >seq71 Length=11673789 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| || ||| || ||| ||||| ||||||||||| Sbjct 72300 GCCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAGG 72241 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| |||||| | || Sbjct 72240 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGGG 72181 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| ||| || || ||| || | | | |||| | | |||||| Sbjct 72180 GATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCAC 72121 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| ||| || |||||||| ||||| |||||||||||||| ||||| ||| Sbjct 72120 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 72069 >seq97 Length=8594300 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||| |||| || || | | ||| Sbjct 7807795 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCAGCCATGCTCC 7807736 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| | ||| || |||| | ||| ||||| || | | |||||||||||| | Sbjct 7807735 AGCTGTTTGCTGGCAAACATCAGACACTGCTGGTCAGGTAGGATACCCTCCTTGTCTTGA 7807676 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | |||| ||| ||| ||||| | ||| || |||||| Sbjct 7807675 ATTTTGGCTTTGACATTCTCAATGGTGTCACCAGTCTCGACCTCAAGGGTGATGGTCTTG 7807616 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 ||||| ||||||||||| ||||| Sbjct 7807615 CCCGTGAGAGTCTTCACTAAGAT 7807593 >seq33 Length=21137282 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| | | |||| |||||| || ||| ||||| ||||||||||| Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | | || ||||| || || || || || || | || ||| ||||||||||| Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | |||| | ||||||| Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| || || |||||||| ||||| |||||||| ||||| ||||| ||| Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 15373526 >seq86 Length=9530769 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| |||| ||||||||||| || || | || ||| Sbjct 8872721 ACCAGGTGCAGGGTGGACTC--TCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCC 8872664 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| | ||| || |||| |||| ||||| || || | |||||||||||| | Sbjct 8872663 AGCTGTTTGCTGGCAAACATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 8872604 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | |||| | | | ||||| | | | || |||||| Sbjct 8872603 ATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCACGACCTCAAGGATGATGGTCTTG 8872544 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||| ||||| Sbjct 8872543 CCTGTGAGGGTCTTCACAAAGATCTGCAT 8872515 >seq6 Length=49021937 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| ||||||||||| ||| || | || ||||| || |||||||| || Sbjct 37593726 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCACCCATCTTCCAGCTGCTTTCCGGCAAA 37593667 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| | | ||||| ||| | | || |||| |||| || ||| ||| || Sbjct 37593666 GATCAACCTCCGCTGGTCAGGAAGGATGCCTTCCTGGTCCTGGATCTTTGCCTTGACGTT 37593607 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | ||| || ||||| || ||||| |||||||| Sbjct 37593606 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCAC 37593547 Query 45325 AAAGATTTGCAT 45336 || || ||||| Sbjct 37593546 TAATATCTGCAT 37593535 >seq100 Length=8175301 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| || | ||| ||||| ||||| Sbjct 5960251 GCCACCTCCCAGGCGCAGCACCAGGTGCAG-GTGGACTGTTGCTGGATGTTTTAGTCTGA 5960309 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| ||||| | | ||| || ||||| ||||| || || Sbjct 5960310 GAGT--GCGGCCATCCTCCAGCTGTTTGCTAACACATACCAGACGCTGCTGGTCAGGTGG 5960367 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || || | | ||| |||| | || || Sbjct 5960368 AATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAACGATGTCACTGGGCTTGAC 5960427 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGC 45334 ||| | ||| || ||||||||| | || |||||||||||||| ||| Sbjct 5960428 CTCAAGGGTGATAGTCTTGCCCATGAGGGTCTTCACAAAGATCTGC 5960473 >seq77 Length=10698663 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || || ||||| || || | || ||| |||||||| || | || ||||| Sbjct 10127808 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTA 10127749 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | | |||| | ||||||||||| ||| || Sbjct 10127748 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 10127689 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 |||||||| ||||| |||||||| ||||| ||||| ||||| Sbjct 10127688 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATACCGCCTC 10127646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395062266966406