Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq37 277 2e-69 seq111 111 2e-19 seq22 98.7 1e-15 >seq37 Length=19344684 Score = 277 bits (306), Expect = 2e-69 Identities = 505/737 (69%), Gaps = 2/737 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| | || ||||| || |||||||||||||| || ||| Sbjct 211301 GACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCT 211360 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||||||| ||||| |||||||| ||||||||||| | | || || | | || Sbjct 211361 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTAAAA 211420 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || ||||| | | | ||| || || | |||||||| ||||| ||||| | ||| Sbjct 211421 CCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAA 211480 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || || || ||||| | | || | || || | ||| || ||| Sbjct 211481 TTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACA 211540 Query 14138 GCCTCGTTTATAATAA-TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAA 14196 || | | || || || || | | || | || || | | | | ||||| || Sbjct 211541 GCACTGATAATTATTTCTCTTACTC-TCTCCTCTGATGGTTTGTGTACTTGGTGTTTGAA 211599 Query 14197 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 14256 || | || || |||||||| || | ||||||||||| | | ||||||| || ||||| Sbjct 211600 CATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAA 211659 Query 14257 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 14316 ||| | || ||||||| ||||||||| || | ||| ||||| | || || || || || Sbjct 211660 TGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGA 211719 Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376 |||||| || || || ||||||||||| ||| | |||| ||| | | || | ||| Sbjct 211720 AAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTT 211779 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 || | | ||| ||||| || | || || || | | || ||| |||||||| Sbjct 211780 GTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAAT 211839 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14496 |||||| || | | |||| | || || | | | ||||| || |||||||| | || Sbjct 211840 AGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACT 211899 Query 14497 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 ||| |||||||| |||||||||| ||| || || || || ||||| ||||| ||||| Sbjct 211900 ATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTC 211959 Query 14557 TGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 || || || ||| | ||||| || |||| |||||||| ||||| |||| ||| Sbjct 211960 TGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACT 212019 Query 14617 AGCTGCAAAAAATGCCA 14633 |||||||| || |||| Sbjct 212020 TGCTGCAAAGAAAGCCA 212036 >seq111 Length=7367144 Score = 111 bits (122), Expect = 2e-19 Identities = 277/417 (66%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 14225 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 14284 |||||||| || ||||||||||| || |||||||| | || | ||||| || | |||| Sbjct 4918147 CCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTTC 4918206 Query 14285 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14344 || | ||| ||||||| || || || || ||| |||| | || || |||| ||||| Sbjct 4918207 TTGAGCCAGAATATTGATGCAAAAGAACCAGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 4918266 Query 14345 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14404 ||| | ||||||| | || | ||||||| ||||| ||||| || Sbjct 4918267 GCTGCAACACGTTCTCTGTGGGTAGCATCTTTGTTCACAATCCAACACAAGGCCCAATCT 4918326 Query 14405 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTA 14464 | | || || | | || ||| |||| || || || || | | |||| | ||||| Sbjct 4918327 GCCTCCTTCTTGACACAAGGCATCCTTTCGATGGCGTTGAAGAGAAATTCCCTTTCTTTG 4918386 Query 14465 GT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14523 | ||| || |||| ||| ||| | ||| ||| ||||| | |||||||||||| Sbjct 4918387 TTGTCTTTAA---CATGTGTCAGTAAAGAGATTATCCATGTCAGAATATATGTTTTCCAT 4918443 Query 14524 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCT 14583 ||| || || || ||||| || || | ||||| ||| || ||| | | || Sbjct 4918444 AGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCTTGAACTTCTTGGACACATTG 4918500 Query 14584 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14638 || |||| |||| || |||||| ||| | |||||||| || | | |||||| Sbjct 4918501 CTCCACCAAGTTTTTATCAACTATGCCACGGCATGCTGCAAAGAAAGTCAGAATATG 4918557 >seq22 Length=27210278 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 23195309 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 23195367 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 23195368 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 23195427 Query 13975 CATAAAATCAAATGGATT 13992 |||||| ||||||||||| Sbjct 23195428 CATAAAGTCAAATGGATT 23195445 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 23199825 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 23199884 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 23199885 AAGCCATAGAAACAGCGGGCTTCTG 23199909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482329405246480