Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq37 277 2e-69
seq111 111 2e-19
seq22 98.7 1e-15
>seq37
Length=19344684
Score = 277 bits (306), Expect = 2e-69
Identities = 505/737 (69%), Gaps = 2/737 (0%)
Strand=Plus/Plus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || || ||||| | ||||| | || ||||| || |||||||||||||| || |||
Sbjct 211301 GACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCT 211360
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017
|||||||| ||||| |||||||| ||||||||||| | | || || | | ||
Sbjct 211361 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTAAAA 211420
Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077
|| ||||| | | | ||| || || | |||||||| ||||| ||||| | |||
Sbjct 211421 CCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAA 211480
Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137
||||| || || || || ||||| | | || | || || | ||| || |||
Sbjct 211481 TTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACA 211540
Query 14138 GCCTCGTTTATAATAA-TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAA 14196
|| | | || || || || | | || | || || | | | | ||||| ||
Sbjct 211541 GCACTGATAATTATTTCTCTTACTC-TCTCCTCTGATGGTTTGTGTACTTGGTGTTTGAA 211599
Query 14197 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 14256
|| | || || |||||||| || | ||||||||||| | | ||||||| || |||||
Sbjct 211600 CATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAA 211659
Query 14257 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 14316
||| | || ||||||| ||||||||| || | ||| ||||| | || || || || ||
Sbjct 211660 TGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGA 211719
Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376
|||||| || || || ||||||||||| ||| | |||| ||| | | || | |||
Sbjct 211720 AAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTT 211779
Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436
|| | | ||| ||||| || | || || || | | || ||| ||||||||
Sbjct 211780 GTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAAT 211839
Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14496
|||||| || | | |||| | || || | | | ||||| || |||||||| | ||
Sbjct 211840 AGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACT 211899
Query 14497 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556
||| |||||||| |||||||||| ||| || || || || ||||| ||||| |||||
Sbjct 211900 ATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTC 211959
Query 14557 TGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616
|| || || ||| | ||||| || |||| |||||||| ||||| |||| |||
Sbjct 211960 TGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACT 212019
Query 14617 AGCTGCAAAAAATGCCA 14633
|||||||| || ||||
Sbjct 212020 TGCTGCAAAGAAAGCCA 212036
>seq111
Length=7367144
Score = 111 bits (122), Expect = 2e-19
Identities = 277/417 (66%), Gaps = 9/417 (2%)
Strand=Plus/Plus
Query 14225 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 14284
|||||||| || ||||||||||| || |||||||| | || | ||||| || | ||||
Sbjct 4918147 CCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTTC 4918206
Query 14285 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14344
|| | ||| ||||||| || || || || ||| |||| | || || |||| |||||
Sbjct 4918207 TTGAGCCAGAATATTGATGCAAAAGAACCAGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 4918266
Query 14345 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14404
||| | ||||||| | || | ||||||| ||||| ||||| ||
Sbjct 4918267 GCTGCAACACGTTCTCTGTGGGTAGCATCTTTGTTCACAATCCAACACAAGGCCCAATCT 4918326
Query 14405 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTA 14464
| | || || | | || ||| |||| || || || || | | |||| | |||||
Sbjct 4918327 GCCTCCTTCTTGACACAAGGCATCCTTTCGATGGCGTTGAAGAGAAATTCCCTTTCTTTG 4918386
Query 14465 GT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14523
| ||| || |||| ||| ||| | ||| ||| ||||| | ||||||||||||
Sbjct 4918387 TTGTCTTTAA---CATGTGTCAGTAAAGAGATTATCCATGTCAGAATATATGTTTTCCAT 4918443
Query 14524 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCT 14583
||| || || || ||||| || || | ||||| ||| || ||| | | ||
Sbjct 4918444 AGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCTTGAACTTCTTGGACACATTG 4918500
Query 14584 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14638
|| |||| |||| || |||||| ||| | |||||||| || | | ||||||
Sbjct 4918501 CTCCACCAAGTTTTTATCAACTATGCCACGGCATGCTGCAAAGAAAGTCAGAATATG 4918557
>seq22
Length=27210278
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 23195309 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 23195367
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 23195368 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 23195427
Query 13975 CATAAAATCAAATGGATT 13992
|||||| |||||||||||
Sbjct 23195428 CATAAAGTCAAATGGATT 23195445
Score = 86.0 bits (94), Expect = 6e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533
||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 23199825 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 23199884
Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558
|| ||||| ||||| | |||||||
Sbjct 23199885 AAGCCATAGAAACAGCGGGCTTCTG 23199909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482329405246480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |