Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq71 100 2e-16 seq102 91.5 1e-13 seq54 91.5 1e-13 seq33 91.5 1e-13 seq134 87.8 1e-12 seq79 87.8 1e-12 seq59 86.0 5e-12 seq38 84.2 2e-11 seq101 82.4 6e-11 seq8 82.4 6e-11 >seq71 Length=11673789 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || ||||| ||||| || ||||||||||| | | || | |||| Sbjct 72284 AGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAGGAAGAGTGCGGCCATCT 72225 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 72224 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGGGGATGCCTTCCTTATCC 72165 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | | ||||||| ||||| || | ||||||| | Sbjct 72164 TGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTC 72105 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || ||||| || |||||||| Sbjct 72104 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 72070 >seq102 Length=8035806 Score = 91.5 bits (100), Expect = 1e-13 Identities = 175/254 (69%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || |||| | |||| ||||||||| || | Sbjct 179629 AAGACTTCTTCCTTTTCTTAGCACCACCACGAGGTCTCAACACCAGGTGAAGTGTAGACT 179570 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | |||||||||||||||| || || | |||||||| ||| ||||| ||| ||| Sbjct 179569 CCTTTTGAATGTTGTAGT----CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 179514 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTG-CTTGACCTGT 18254 | |||||||| ||||| || | | ||||||||| | |||| | ||| || | | Sbjct 179513 TCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTATCATGGA-TTGTGGCCTTTACATTT 179455 Query 18255 GCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACA 18314 | | | || ||| || ||| | ||||||| | || || || | ||||| || Sbjct 179454 TCTATCTTATCTGAGGGTTCAACTTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACG 179395 Query 18315 AAAATTTGCATTTT 18328 ||||| |||||||| Sbjct 179394 AAAATCTGCATTTT 179381 >seq54 Length=16265076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 172/252 (68%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATCCTCCCCGT--AGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || | ||||| | || | ||||| || || | Sbjct 5606976 AAGACTTCTTCCTTTTCTTAGCACCACCATGGAGTCTCAACACAAGATGAAGAGTAGACT 5607035 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | || |||||||||||||| | || | | |||||||| ||| ||||| ||| ||| Sbjct 5607036 CCTTCTGAATGTTGTAGTCAGACAAAATACATCCATCTTCCAGTTGCTTGCCAGCAAAGA 5607095 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | |||||||| ||||| || | |||||||||||| ||| | ||| || | | Sbjct 5607096 TCAGTCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGGCCTTTACATTTT 5607155 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | ||| || ||| || | || | ||||||| | || || || | ||||| |||| Sbjct 5607156 CTGTAGTATCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACAA 5607215 Query 18316 AAATTTGCATTT 18327 |||| ||| ||| Sbjct 5607216 AAATCTGCTTTT 5607227 >seq33 Length=21137282 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | | |||| Sbjct 15373741 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCT 15373682 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | |||||||||||| Sbjct 15373681 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 15373622 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| || | |||||| | Sbjct 15373621 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTC 15373562 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || || || || |||||||| Sbjct 15373561 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 15373527 >seq134 Length=5851302 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || || ||| Sbjct 3733401 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGA 3733342 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 3733341 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 3733282 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | || Sbjct 3733281 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 3733222 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 3733221 TCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 3733162 Query 18324 ATTTT 18328 ||||| Sbjct 3733161 ATTTT 3733157 >seq79 Length=10412959 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/222 (68%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 108418 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 108359 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC-------CACGGGCACGCCTTC 18226 |||| || ||||| ||| |||| || || || ||||| ||| | |||||| Sbjct 108358 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGAGAGGGGGGAATGCCTTC 108299 Query 18227 CTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 |||||| || | ||| || | | | | ||||||| |||||| ||| | ||| Sbjct 108298 CTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGT 108239 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| | |||||||||| || || |||| || |||||||| Sbjct 108238 GATGGTCTTGCCGGTCATGGTCTTCGCAAAGATCTGCATTTT 108197 >seq59 Length=14671897 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || | || ||||| || ||||||||||| | || || | |||| Sbjct 11745337 AGGACCAAGTGCAGAATGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 11745278 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | ||| || || || || | ||||||||| || Sbjct 11745277 TCCAGCTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 11745218 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||||| ||||||| |||| ||||||| | Sbjct 11745217 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 11745158 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| | || || || || || ||||| Sbjct 11745157 TTACTGGTAAGGGTCTTCACGAAGATCTGCAT 11745126 >seq38 Length=19171412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || || |||||||||||||| | || || | |||||||| ||| Sbjct 14820540 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 14820599 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| |||||||| ||||| || | ||||||||||| || | Sbjct 14820600 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 14820659 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | | | || || ||| || || | ||||||| | || || || Sbjct 14820660 GCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTA 14820719 Query 18303 AATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| || ||||| |||||||| Sbjct 14820720 AGGGTTTTCACGAAAATCTGCATTTT 14820745 >seq101 Length=8127303 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATCCTCCCCGT--AGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | | || ||||| | || | ||||| || || | Sbjct 4241857 AAGACTTCTTCCTTTTCTTAGCACCACTGTGAAGTCTCAACACAAGATGAAGAGTAGACT 4241916 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||| ||||| | || || ||||||||||| ||| ||||| ||| ||| Sbjct 4241917 CCTTTTGAATGTTATAGTCAGACAAAGTACAACAATCTTCCAGTTGCTTGCCAGCAAAGA 4241976 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | |||||||| ||||| || | ||||| ||||| Sbjct 4241977 TCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 4242013 >seq8 Length=45331107 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| ||||| || || || ||||||||||||||||| | || || Sbjct 31945657 AGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGT 31945598 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | ||| ||||| |||||||| | |||||| ||||| || | |||||| Sbjct 31945597 CCATCTTCTAGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCC 31945538 Query 18228 TTATC 18232 ||||| Sbjct 31945537 TTATC 31945533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379331581937070