Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq71 100 2e-16
seq102 91.5 1e-13
seq54 91.5 1e-13
seq33 91.5 1e-13
seq134 87.8 1e-12
seq79 87.8 1e-12
seq59 86.0 5e-12
seq38 84.2 2e-11
seq101 82.4 6e-11
seq8 82.4 6e-11
>seq71
Length=11673789
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| || || ||||| ||||| || ||||||||||| | | || | ||||
Sbjct 72284 AGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAGGAAGAGTGCGGCCATCT 72225
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || ||| | ||||||||||||
Sbjct 72224 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGGGGATGCCTTCCTTATCC 72165
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | | | | ||||||| ||||| || | ||||||| |
Sbjct 72164 TGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTC 72105
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||||||||| || || ||||| || ||||||||
Sbjct 72104 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 72070
>seq102
Length=8035806
Score = 91.5 bits (100), Expect = 1e-13
Identities = 175/254 (69%), Gaps = 8/254 (3%)
Strand=Plus/Minus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || || |||| | |||| ||||||||| || |
Sbjct 179629 AAGACTTCTTCCTTTTCTTAGCACCACCACGAGGTCTCAACACCAGGTGAAGTGTAGACT 179570
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| |||||||||||||||| || || | |||||||| ||| ||||| ||| |||
Sbjct 179569 CCTTTTGAATGTTGTAGT----CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 179514
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTG-CTTGACCTGT 18254
| |||||||| ||||| || | | ||||||||| | |||| | ||| || | |
Sbjct 179513 TCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTATCATGGA-TTGTGGCCTTTACATTT 179455
Query 18255 GCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACA 18314
| | | || ||| || ||| | ||||||| | || || || | ||||| ||
Sbjct 179454 TCTATCTTATCTGAGGGTTCAACTTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACG 179395
Query 18315 AAAATTTGCATTTT 18328
||||| ||||||||
Sbjct 179394 AAAATCTGCATTTT 179381
>seq54
Length=16265076
Score = 91.5 bits (100), Expect = 1e-13
Identities = 172/252 (68%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 18078 AATACATTTTCTTTTTGTTATCCTCCCCGT--AGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || | ||||| | || | ||||| || || |
Sbjct 5606976 AAGACTTCTTCCTTTTCTTAGCACCACCATGGAGTCTCAACACAAGATGAAGAGTAGACT 5607035
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| || |||||||||||||| | || | | |||||||| ||| ||||| ||| |||
Sbjct 5607036 CCTTCTGAATGTTGTAGTCAGACAAAATACATCCATCTTCCAGTTGCTTGCCAGCAAAGA 5607095
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255
| |||||||| ||||| || | |||||||||||| ||| | ||| || | |
Sbjct 5607096 TCAGTCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGGCCTTTACATTTT 5607155
Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315
| ||| || ||| || | || | ||||||| | || || || | ||||| ||||
Sbjct 5607156 CTGTAGTATCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACAA 5607215
Query 18316 AAATTTGCATTT 18327
|||| ||| |||
Sbjct 5607216 AAATCTGCTTTT 5607227
>seq33
Length=21137282
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || ||||| || ||||||||||| | | || | | ||||
Sbjct 15373741 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCT 15373682
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || || | ||||||||||||
Sbjct 15373681 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 15373622
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | ||| || | | | | ||||||| |||||| || | |||||| |
Sbjct 15373621 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTC 15373562
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||||||||| || || || || || ||||||||
Sbjct 15373561 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 15373527
>seq134
Length=5851302
Score = 87.8 bits (96), Expect = 1e-12
Identities = 167/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || || |||
Sbjct 3733401 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGA 3733342
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||||| ||| ||||| ||| |||| ||||||
Sbjct 3733341 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 3733282
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| || | ||| || | | | | ||
Sbjct 3733281 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 3733222
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 3733221 TCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 3733162
Query 18324 ATTTT 18328
|||||
Sbjct 3733161 ATTTT 3733157
>seq79
Length=10412959
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/222 (68%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || ||||| || ||||||||||| | | || | ||||
Sbjct 108418 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 108359
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC-------CACGGGCACGCCTTC 18226
|||| || ||||| ||| |||| || || || ||||| ||| | ||||||
Sbjct 108358 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGAGAGGGGGGAATGCCTTC 108299
Query 18227 CTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286
|||||| || | ||| || | | | | ||||||| |||||| ||| | |||
Sbjct 108298 CTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGT 108239
Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||| | |||||||||| || || |||| || ||||||||
Sbjct 108238 GATGGTCTTGCCGGTCATGGTCTTCGCAAAGATCTGCATTTT 108197
>seq59
Length=14671897
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || | || ||||| || ||||||||||| | || || | ||||
Sbjct 11745337 AGGACCAAGTGCAGAATGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 11745278
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| ||||| || ||| |||| | ||| || || || || | ||||||||| ||
Sbjct 11745277 TCCAGCTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 11745218
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | | |||||| | ||| ||||||| ||||||| |||| ||||||| |
Sbjct 11745217 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 11745158
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||| | || || || || || |||||
Sbjct 11745157 TTACTGGTAAGGGTCTTCACGAAGATCTGCAT 11745126
>seq38
Length=19171412
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || || || || |||||||||||||| | || || | |||||||| |||
Sbjct 14820540 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 14820599
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| |||||||| ||||| || | ||||||||||| || |
Sbjct 14820600 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 14820659
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | | | | || || ||| || || | ||||||| | || || ||
Sbjct 14820660 GCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTA 14820719
Query 18303 AATGTTTTTACAAAAATTTGCATTTT 18328
| ||||| || ||||| ||||||||
Sbjct 14820720 AGGGTTTTCACGAAAATCTGCATTTT 14820745
>seq101
Length=8127303
Score = 82.4 bits (90), Expect = 6e-11
Identities = 113/157 (72%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 18078 AATACATTTTCTTTTTGTTATCCTCCCCGT--AGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | | || ||||| | || | ||||| || || |
Sbjct 4241857 AAGACTTCTTCCTTTTCTTAGCACCACTGTGAAGTCTCAACACAAGATGAAGAGTAGACT 4241916
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| ||||||||||| ||||| | || || ||||||||||| ||| ||||| ||| |||
Sbjct 4241917 CCTTTTGAATGTTATAGTCAGACAAAGTACAACAATCTTCCAGTTGCTTGCCAGCAAAGA 4241976
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
| |||||||| ||||| || | ||||| |||||
Sbjct 4241977 TCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 4242013
>seq8
Length=45331107
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167
||||| | |||| ||||| || || || ||||||||||||||||| | || ||
Sbjct 31945657 AGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGT 31945598
Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227
| |||||| | ||| ||||| |||||||| | |||||| ||||| || | ||||||
Sbjct 31945597 CCATCTTCTAGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCC 31945538
Query 18228 TTATC 18232
|||||
Sbjct 31945537 TTATC 31945533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379331581937070
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