Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq37 111 3e-19 >seq37 Length=19344684 Score = 111 bits (122), Expect = 3e-19 Identities = 288/437 (66%), Gaps = 9/437 (2%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||||||||| ||||| ||||||||| |||| | || |||||||| |||||| || Sbjct 211749 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTC 211690 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | || | ||||||| ||||| | || ||||| | | | || || || Sbjct 211689 AAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTACTGGCAGAGATGAG 211630 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 ||| | || | || || || ||| || |||| ||| | || | | |||||| Sbjct 211629 GGTTTACACTGTGATTTCGCTTGCCTGATGTTCAAACA---CCAAGTACACAAACCATCA 211573 Query 102101 AGAGAAAGGATTCTTGA---AATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 || || | || |||| ||| | || || || || ||||| || || || Sbjct 211572 GAGGAGAGAGTAAGAGAAATAATTATCAGT---GCTGTTCGGATGGAACAGGAGTTCCTT 211516 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 || | || ||||||| || | | || ||||| |||| | |||| || |||||| Sbjct 211515 ACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATT 211456 Query 102218 GAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACC 102277 || ||||||||||| | ||| || | ||| |||| | | | | | || Sbjct 211455 GAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAGGGTTTTCAGAGTAGAG 211396 Query 102278 AACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAG 102337 || || || || ||||| |||||||| || || || || ||||| ||||| ||| Sbjct 211395 AATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAACACTAACTTCTTTGAGAAG 211336 Query 102338 AGAGTCGCCGAGTATCA 102354 ||||| | ||||||| Sbjct 211335 AGAGTAGGTAAGTATCA 211319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989549944085130