Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq37 275 6e-69
seq111 118 1e-21
seq132 105 6e-18
seq9 87.8 2e-12
>seq37
Length=19344684
Score = 275 bits (304), Expect = 6e-69
Identities = 530/775 (68%), Gaps = 9/775 (1%)
Strand=Plus/Plus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366
||||||| | | ||| | ||| |||||| | ||||| | || |||| || | || |
Sbjct 211285 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATACTTACCTACTC-TCTTCTCAA 211343
Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426
| || ||||| || ||||| ||||| |||| |||||||||| ||| ||||| | |||
Sbjct 211344 AGAAGTTAGTGTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTC 211403
Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486
|||| || | | |||| | || | | ||| ||||| || || || || || |
Sbjct 211404 TGAAAACCCTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATT 211463
Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546
| ||||| | |||||||| || || || | ||| || | || | || | ||||
Sbjct 211464 GCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACT 211523
Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606
||| ||| || ||| ||| || ||||| ||| |||| |||||| |
Sbjct 211524 CCTGTTCCATCCGAACAGCACTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGT 211583
Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666
||| | ||||| ||||| | || || |||||||| |||||||| || ||||| |
Sbjct 211584 GTACTTGGTGTTTGAACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAG 211643
Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726
| ||||||||||||||||| | || ||||||| ||||||||| || | ||| ||||| |
Sbjct 211644 TAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGG 211703
Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786
||||| |||||||||||||| || || ||||| || ||||| ||| | || ||| |
Sbjct 211704 ATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCAC 211763
Query 11787 CATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843
|||| || ||| ||| | ||| ||||||||| || ||||| || || |
Sbjct 211764 CATAGGTAGCCTCTTTGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACAC 211823
Query 11844 ATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATA 11901
| ||| ||||| ||||| || | | |||| | |||| | |||| ||| ||
Sbjct 211824 AAGGCATCGTTTCAATAGCATTGAAGAGAAATTC--CCTTTCGTTGGGATCTTTTATGTA 211881
Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961
|| || || | | |||||| ||||| ||||| || |||| ||| || ||||| || ||
Sbjct 211882 AGTGTCAATAAGGAGACTATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCC 211941
Query 11962 ATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTC 12021
||||||||| | || |||| ||| || || ||||| ||| | || || ||
Sbjct 211942 ATAGAAACAGTGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTC 212001
Query 12022 ATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076
|||||| || |||| ||| | |||||| || || || | || ||||||||||
Sbjct 212002 ATTTACTATGCCATAACTTGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTAT 212056
>seq111
Length=7367144
Score = 118 bits (130), Expect = 1e-21
Identities = 242/354 (68%), Gaps = 17/354 (5%)
Strand=Plus/Plus
Query 11630 CACGCAAAATCACAATG--------TAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681
|| ||||| |||||||| |||||| || || || || || |||||||| ||||
Sbjct 4918118 CAAGCAAAGTCACAATGTAAACTGTTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 4918177
Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG 11741
|||| | || | ||||| || | |||| || | ||| ||||| | ||||| |||||||
Sbjct 4918178 ATGTGAGGCCAGACATCAGTCATTGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 4918237
Query 11742 AAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA-CCTTGT 11798
|| |||| | || || || | ||||| ||| | || | ||||| | || | | |
Sbjct 4918238 AAGAGAAGGTGCCTTCTACTGTGGCAAAGGCTGCAACACGTTCTCTGTGGGTAGCATCTT 4918297
Query 11799 TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTA 11858
|| | ||||| ||||||||| || | ||| || || || ||| |||| |
Sbjct 4918298 TGTTCACAATCCAACACAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATCCTTTCGA 4918357
Query 11859 TAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA 11916
| ||||| | | |||| | ||||| | || ||| ||| | |||| || | || |
Sbjct 4918358 TGGCGTTGAAGAGAAATTC--CCTTTCTTTGTTGTCT-TTA-ACATGTGTCAGTAAAGAG 4918413
Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970
| ||| ||| || |||| || ||||||||||| ||||| || |||||||| ||
Sbjct 4918414 ATTATCCATGTCAGAATATATGTTTTCCATAGCAATTTGGAAGCCATAGAAGCA 4918467
>seq132
Length=5918258
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || |
Sbjct 980252 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 980193
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| | ||| || ||||| || || |
Sbjct 980192 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 980133
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 980132 CCACCACTCTTTCCCC 980117
>seq9
Length=44311105
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||
Sbjct 1878112 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATA 1878171
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || || |||||||| || || || || |
Sbjct 1878172 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 1878231
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 1878232 CTGTTTCTTATACCAT 1878247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468509069279840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |