Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq37 275 6e-69 seq111 118 1e-21 seq132 105 6e-18 seq9 87.8 2e-12 >seq37 Length=19344684 Score = 275 bits (304), Expect = 6e-69 Identities = 530/775 (68%), Gaps = 9/775 (1%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | ||||| | || |||| || | || | Sbjct 211285 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATACTTACCTACTC-TCTTCTCAA 211343 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || ||||| || ||||| ||||| |||| |||||||||| ||| ||||| | ||| Sbjct 211344 AGAAGTTAGTGTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTC 211403 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || | | |||| | || | | ||| ||||| || || || || || | Sbjct 211404 TGAAAACCCTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATT 211463 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | |||||||| || || || | ||| || | || | || | |||| Sbjct 211464 GCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACT 211523 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| ||| || ||| ||| || ||||| ||| |||| |||||| | Sbjct 211524 CCTGTTCCATCCGAACAGCACTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGT 211583 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| | ||||| ||||| | || || |||||||| |||||||| || ||||| | Sbjct 211584 GTACTTGGTGTTTGAACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAG 211643 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | ||||||||||||||||| | || ||||||| ||||||||| || | ||| ||||| | Sbjct 211644 TAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGG 211703 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| |||||||||||||| || || ||||| || ||||| ||| | || ||| | Sbjct 211704 ATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCAC 211763 Query 11787 CATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843 |||| || ||| ||| | ||| ||||||||| || ||||| || || | Sbjct 211764 CATAGGTAGCCTCTTTGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACAC 211823 Query 11844 ATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATA 11901 | ||| ||||| ||||| || | | |||| | |||| | |||| ||| || Sbjct 211824 AAGGCATCGTTTCAATAGCATTGAAGAGAAATTC--CCTTTCGTTGGGATCTTTTATGTA 211881 Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961 || || || | | |||||| ||||| ||||| || |||| ||| || ||||| || || Sbjct 211882 AGTGTCAATAAGGAGACTATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCC 211941 Query 11962 ATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTC 12021 ||||||||| | || |||| ||| || || ||||| ||| | || || || Sbjct 211942 ATAGAAACAGTGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTC 212001 Query 12022 ATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 |||||| || |||| ||| | |||||| || || || | || |||||||||| Sbjct 212002 ATTTACTATGCCATAACTTGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTAT 212056 >seq111 Length=7367144 Score = 118 bits (130), Expect = 1e-21 Identities = 242/354 (68%), Gaps = 17/354 (5%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATG--------TAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 || ||||| |||||||| |||||| || || || || || |||||||| |||| Sbjct 4918118 CAAGCAAAGTCACAATGTAAACTGTTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 4918177 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG 11741 |||| | || | ||||| || | |||| || | ||| ||||| | ||||| ||||||| Sbjct 4918178 ATGTGAGGCCAGACATCAGTCATTGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 4918237 Query 11742 AAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA-CCTTGT 11798 || |||| | || || || | ||||| ||| | || | ||||| | || | | | Sbjct 4918238 AAGAGAAGGTGCCTTCTACTGTGGCAAAGGCTGCAACACGTTCTCTGTGGGTAGCATCTT 4918297 Query 11799 TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTA 11858 || | ||||| ||||||||| || | ||| || || || ||| |||| | Sbjct 4918298 TGTTCACAATCCAACACAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATCCTTTCGA 4918357 Query 11859 TAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA 11916 | ||||| | | |||| | ||||| | || ||| ||| | |||| || | || | Sbjct 4918358 TGGCGTTGAAGAGAAATTC--CCTTTCTTTGTTGTCT-TTA-ACATGTGTCAGTAAAGAG 4918413 Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 | ||| ||| || |||| || ||||||||||| ||||| || |||||||| || Sbjct 4918414 ATTATCCATGTCAGAATATATGTTTTCCATAGCAATTTGGAAGCCATAGAAGCA 4918467 >seq132 Length=5918258 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 980252 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 980193 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| || || | Sbjct 980192 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 980133 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 980132 CCACCACTCTTTCCCC 980117 >seq9 Length=44311105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || |||||||| Sbjct 1878112 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATA 1878171 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 1878172 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 1878231 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 1878232 CTGTTTCTTATACCAT 1878247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468509069279840