Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq12 147 2e-30 seq22 129 5e-25 seq232 104 2e-17 >seq12 Length=39782659 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| ||||| || |||||||||||||||||||| || | Sbjct 25689308 TCAGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 25689249 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || ||||| |||||||||||||||||||| || Sbjct 25689248 GCACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCA 25689189 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | || || ||||| || |||||| Sbjct 25689188 CCACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 25689145 >seq22 Length=27210278 Score = 129 bits (142), Expect = 5e-25 Identities = 194/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| ||| || || | ||| || ||||| || || || ||||| | || Sbjct 26912585 AGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGCATGT 26912644 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 ||||| || || || |||||||||||| ||| ||||| ||||| || ||||||||| Sbjct 26912645 ACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGATCATGTACGTGAGCAGGGCGTAG 26912704 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 |||| |||||| || || | || ||||||| ||| || |||||||||||||| ||| Sbjct 26912705 CTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCTTGATCTCTGGTACAGCTGACAG 26912764 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||||||| | ||||||| ||||| || | | || || || || | |||||| Sbjct 26912765 GACAGCTCACTGTTCACCACGTAGAACTGGCAGAGGGCATGGCATGGGGGCAACGCCATC 26912824 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | | || ||| || ||||| | ||||||| Sbjct 26912825 AGAGGAAGATCCCTTGGATTCCAAG---ACATAAC 26912856 >seq232 Length=582148 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 2960 AAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGT 3019 || || || ||||| | || |||| || ||||| || ||||| || || ||||| Sbjct 414505 AATTTTAAGGCATCAGCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTG 414446 Query 3020 AATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATG 3079 | ||||||||| | || | ||||||||| | | ||| || ||||| ||||| ||| Sbjct 414445 AGTTCTCTGCTGAGAACTAAATTAATTCTTTATTTTAAAGGTCGATTCTTCTCAGGAATG 414386 Query 3080 GAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTA 3139 || || || || | | |||||||| |||| ||||| || |||| | || || | || Sbjct 414385 GAGAAGCAGGTCTTCCTACCCATAATCACCAGATTCTGTTGACCTTCTACTGAAGAGGTT 414326 Query 3140 GACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 | |||||| ||||||||||| | | ||| | || || ||||| |||| Sbjct 414325 GTGGTCATTCTCTGAAAATACCTGAATTCACTCCTCAGCAGTGGCCAGGGCA 414274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427761996485280