Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq37 109 4e-19 >seq37 Length=19344684 Score = 109 bits (120), Expect = 4e-19 Identities = 315/470 (67%), Gaps = 30/470 (6%) Strand=Plus/Minus Query 22447 TTCATGTCTCACATACTGGCATTCTTTGCAATGGCAG--ATGGCATTGTAGGCGACAACC 22504 || || || ||| | ||||| ||||||||| | || ||||||| ||| || ||| Sbjct 212052 TTTATATCCCACGTTCTGGCTTTCTTTGCA--GCAAGTTATGGCATAGTAAATGAAAACT 211995 Query 22505 TTGTGT-GCAATTTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGG 22563 | ||| || |||| || || ||| || | || |||||||| ||||||||| Sbjct 211994 TGGTGGAGCGATTTAGCCAA-GAAGTTCAG---ATCACAGAAGCCCACTGTTTCTATGGC 211939 Query 22564 TTTCAGGTGGCAATGGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTA 22623 || || |||| ||| |||| |||||| ||||||| |||| || || ||| ||| | Sbjct 211938 TTCCAAATGGCCATGAAAAACATACATTCTGAAATATATAGTCTCCTTATTGACACTTAC 211879 Query 22624 GTAGCTAAAGAG---AATCAAGCCGCATTGTT-TTCA--GCAGCTGAAGATATGCCATGT 22677 || ||||| || || | ||| | |||| || |||| ||||| ||| Sbjct 211878 ATA---AAAGATCCCAACGAAAGGGAATTTCTCTTCAATGCTATTGAAACGATGCCTTGT 211822 Query 22678 GTTAAAGCCAAGGCACAGTGGGC--TGCACAATGGCTGAATGCCACACATAAGT---CTA 22732 || || |||||| | ||||| ||| | || || | ||| | | | ||| Sbjct 211821 GTCAAGAAGAAGGCAGATTGGGCCTTGCTCTG-GGTTG---GGGACAAAGAGGCTACCTA 211766 Query 22733 TCGC-AACACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTT 22791 | | ||||||| | |||||||| || || |||||| || | |||||||| || ||| Sbjct 211765 TGGTGAACACGTTGCA--GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTT 211708 Query 22792 GCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAG 22851 || ||||||||||||| |||||||| || ||||| || | | ||||| || || Sbjct 211707 GCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAA 211648 Query 22852 TTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 | | | || | || || ||| |||||||||| || ||||| || |||| Sbjct 211647 CTTACTGGCAGAGATGAGGGTTTACACTGTGATTTCGCTTGCCTGATGTT 211598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356221938470458