Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq33 98.7 1e-15 seq27 91.5 1e-13 seq88 87.8 2e-12 seq85 87.8 2e-12 seq77 87.8 2e-12 seq102 86.0 6e-12 seq101 86.0 6e-12 seq9 86.0 6e-12 seq14 82.4 8e-11 >seq33 Length=21137282 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| | ||||| || | ||| | || |||||||| || ||||| || || Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| ||||| ||||| || || ||| |||| || | ||||| |||||||| Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | ||| | ||||| ||||||||||| Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||||| || || ||||| || ||||| Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15373530 >seq27 Length=24139186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || || || || || | |||| | |||||| |||||||| ||| Sbjct 5858116 GTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGCCCGTCTTCCAGCTGTTTCCCA 5858057 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||| | ||||| || ||||| |||||||||||||| ||| ||| || Sbjct 5858056 GCAAAGATCGATCTCTGCTGCTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTG 5857997 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||| |||||| ||||| | ||| | |||||||| |||| || Sbjct 5857996 ATGTTTTCAATAATGTCACTGGGCTGGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 5857937 Query 139748 TTTACGAATATTTGC 139762 || | ||| || ||| Sbjct 5857936 TTCATGAAGATCTGC 5857922 >seq88 Length=9397244 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| || |||| | || |||||||| || ||||| || || Sbjct 1074120 GCCACCTCGCAGGTGCAGCACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 1074179 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || || ||||||||||||||| | |||||| | |||||||| | || Sbjct 1074180 GAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGG 1074239 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| |||| | ||| | | || | ||||| ||||||| | Sbjct 1074240 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 1074298 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 ||| || ||| | |||||||| || | || || || || || ||| Sbjct 1074299 CCTTAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 1074345 >seq85 Length=9676098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| ||||||||||| || || || || | |||||| || | Sbjct 5982631 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTGTCTTCCAGTTAC 5982572 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| ||||| | | ||||||||| ||||| || ||||| || || ||| || Sbjct 5982571 TTGCCAGCAAAGATCCGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 5982512 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| || || | ||| || ||||| | ||| | ||||| || || Sbjct 5982511 GCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTA 5982452 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 5982451 AGGGTTTTCACGAAAATCTGCAT 5982429 >seq77 Length=10698663 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| ||||| || |||||||| || Sbjct 10127808 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTA 10127749 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||| | ||| | Sbjct 10127748 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 10127689 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| |||| || || ||||| || |||||| Sbjct 10127688 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATA 10127653 >seq102 Length=8035806 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| || | ||||| |||||||| ||||||||||| || ||| || | || | | Sbjct 179592 CAACACCAGGTGAAGTGTAGACTCCTTTTGAATGTTGTA----GTCAAAGTACGTCCA-T 179538 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||||| | ||||||||| ||||| || | ||| || | Sbjct 179537 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTAT 179478 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | |||| | |||| | ||| | | || | ||| || || || | ||| | | Sbjct 179477 CATGGATTGTGGCCTTTACATTTTCTATCTTATCTGAGGGTTCAACTTCGAGGGTGATGG 179418 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || || | ||||| ||||| || ||||| Sbjct 179417 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 179384 >seq101 Length=8127303 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| |||||||||||||| || || || | | ||||| || || Sbjct 4241904 TGAAGAGTAGACTCCTTTTGAATGTTATAGTCAGACAAAGTACAACAATCTTCCAGTTGC 4241963 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || |||||| ||||||| | ||||||||| ||||| || |||||||| || Sbjct 4241964 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 4242013 >seq9 Length=44311105 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| |||| ||| | || |||||||| |||||||| || || Sbjct 3708447 GCCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 3708388 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || || ||||||||||| ||| | ||||||| ||||| || || || Sbjct 3708387 GAGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGG 3708328 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCA 139715 || || || ||||| ||| |||| | ||| | | || | || || ||||||| | Sbjct 3708327 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCGA 3708269 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||| |||| || | || || || || || || || Sbjct 3708268 CCTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220 >seq14 Length=37227512 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 139569 TAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAG 139628 ||||||| ||||||||||| || | | | | || || | ||||| || || || |||| Sbjct 27607806 TAGACTCCTTTTGAATGTTGTAGT--CAAAGTATG-TCTA-TCTTCCAGTTGCTTGCCAG 27607861 Query 139629 CATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTA 139688 || ||||||| | || |||||| ||||| || ||||| || || ||| || |||| Sbjct 27607862 CAAAGATCAGTCTTTCCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTA 27607921 Query 139689 GCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTT 139748 | ||| ||||||| ||| || ||||||| ||| | |||| || | | |||| Sbjct 27607922 CATTTTCTGTCGTGTCGGAGGGTTCAACCTCAAGGGTGATGATCTTCCCCATGAGGGTTT 27607981 Query 139749 TTACGAATATTTGCAT 139764 | || || || ||||| Sbjct 27607982 TCACAAAAATCTGCAT 27607997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496047344651200