Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq33 98.7 1e-15
seq27 91.5 1e-13
seq88 87.8 2e-12
seq85 87.8 2e-12
seq77 87.8 2e-12
seq102 86.0 6e-12
seq101 86.0 6e-12
seq9 86.0 6e-12
seq14 82.4 8e-11
>seq33
Length=21137282
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||||| | ||||| || | ||| | || |||||||| || ||||| || ||
Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| ||||| ||||| || || ||| |||| || | ||||| ||||||||
Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||| || || ||| || || | | ||| | ||||| |||||||||||
Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | ||||||||||||| || || ||||| || |||||
Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15373530
>seq27
Length=24139186
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || || || || || | |||| | |||||| |||||||| |||
Sbjct 5858116 GTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGCCCGTCTTCCAGCTGTTTCCCA 5858057
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||| | ||||| || ||||| |||||||||||||| ||| ||| ||
Sbjct 5858056 GCAAAGATCGATCTCTGCTGCTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTG 5857997
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | ||| | |||| |||||| ||||| | ||| | |||||||| |||| ||
Sbjct 5857996 ATGTTTTCAATAATGTCACTGGGCTGGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 5857937
Query 139748 TTTACGAATATTTGC 139762
|| | ||| || |||
Sbjct 5857936 TTCATGAAGATCTGC 5857922
>seq88
Length=9397244
Score = 87.8 bits (96), Expect = 2e-12
Identities = 157/227 (69%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| ||||| | ||| || |||| | || |||||||| || ||||| || ||
Sbjct 1074120 GCCACCTCGCAGGTGCAGCACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 1074179
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||||| || || ||||||||||||||| | |||||| | |||||||| | ||
Sbjct 1074180 GAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGG 1074239
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|| || || ||||| ||| |||| | ||| | | || | ||||| ||||||| |
Sbjct 1074240 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 1074298
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762
||| || ||| | |||||||| || | || || || || || |||
Sbjct 1074299 CCTTAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 1074345
>seq85
Length=9676098
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| |||||||| ||||||||||| || || || || | |||||| || |
Sbjct 5982631 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTGTCTTCCAGTTAC 5982572
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| |||||| ||||| | | ||||||||| ||||| || ||||| || || ||| ||
Sbjct 5982571 TTGCCAGCAAAGATCCGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 5982512
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|||| | ||| || || | ||| || ||||| | ||| | ||||| || ||
Sbjct 5982511 GCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTA 5982452
Query 139742 AACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||| || |||||
Sbjct 5982451 AGGGTTTTCACGAAAATCTGCAT 5982429
>seq77
Length=10698663
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || || ||| |||| || | ||||| ||||| || |||||||| ||
Sbjct 10127808 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTA 10127749
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | ||| | ||||| ||||||||||||| | ||| |
Sbjct 10127748 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 10127689
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||||| |||| || || ||||| || ||||||
Sbjct 10127688 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATA 10127653
>seq102
Length=8035806
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/214 (70%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610
||| || | ||||| |||||||| ||||||||||| || ||| || | || | |
Sbjct 179592 CAACACCAGGTGAAGTGTAGACTCCTTTTGAATGTTGTA----GTCAAAGTACGTCCA-T 179538
Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670
|||| || || || |||||| ||||||| | ||||||||| ||||| || | ||| || |
Sbjct 179537 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTAT 179478
Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
| |||| | |||| | ||| | | || | ||| || || || | ||| | |
Sbjct 179477 CATGGATTGTGGCCTTTACATTTTCTATCTTATCTGAGGGTTCAACTTCGAGGGTGATGG 179418
Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || || | ||||| ||||| || |||||
Sbjct 179417 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 179384
>seq101
Length=8127303
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| |||||||| |||||||||||||| || || || | | ||||| || ||
Sbjct 4241904 TGAAGAGTAGACTCCTTTTGAATGTTATAGTCAGACAAAGTACAACAATCTTCCAGTTGC 4241963
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
|| |||||| ||||||| | ||||||||| ||||| || |||||||| ||
Sbjct 4241964 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 4242013
>seq9
Length=44311105
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| |||| | |||| |||| ||| | || |||||||| |||||||| || ||
Sbjct 3708447 GCCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 3708388
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||||| || || ||||||||||| ||| | ||||||| ||||| || || ||
Sbjct 3708387 GAGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGG 3708328
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCA 139715
|| || || ||||| ||| |||| | ||| | | || | || || ||||||| |
Sbjct 3708327 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCGA 3708269
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||| ||| | ||| |||| || | || || || || || || ||
Sbjct 3708268 CCTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220
>seq14
Length=37227512
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 139569 TAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAG 139628
||||||| ||||||||||| || | | | | || || | ||||| || || || ||||
Sbjct 27607806 TAGACTCCTTTTGAATGTTGTAGT--CAAAGTATG-TCTA-TCTTCCAGTTGCTTGCCAG 27607861
Query 139629 CATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTA 139688
|| ||||||| | || |||||| ||||| || ||||| || || ||| || ||||
Sbjct 27607862 CAAAGATCAGTCTTTCCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTA 27607921
Query 139689 GCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTT 139748
| ||| ||||||| ||| || ||||||| ||| | |||| || | | ||||
Sbjct 27607922 CATTTTCTGTCGTGTCGGAGGGTTCAACCTCAAGGGTGATGATCTTCCCCATGAGGGTTT 27607981
Query 139749 TTACGAATATTTGCAT 139764
| || || || |||||
Sbjct 27607982 TCACAAAAATCTGCAT 27607997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496047344651200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |