Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq37 284 1e-71
seq111 120 3e-22
seq22 98.7 1e-15
>seq37
Length=19344684
Score = 284 bits (314), Expect = 1e-71
Identities = 508/738 (69%), Gaps = 4/738 (1%)
Strand=Plus/Plus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || ||||| | ||||| | || ||||| || |||||||||||||| || |||
Sbjct 211301 GACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCT 211360
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685
|||||||| ||||| |||||||| ||||||||||| | | || || | | ||
Sbjct 211361 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTAAAA 211420
Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745
|| ||||| | | | ||| || || | ||||||||| ||||| ||||| | |||
Sbjct 211421 CCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAA 211480
Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805
||||| || || || || ||||| | | || | || || | ||| || |||
Sbjct 211481 TTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACA 211540
Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 13863
|| || || | || || | || |||| | || || | | | | ||||| |
Sbjct 211541 GCA-CTGATA-ATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGA 211598
Query 13864 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13923
| || | || || |||||||| || | ||||||||||| | | ||||||| || ||||
Sbjct 211599 ACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAA 211658
Query 13924 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGG 13983
|||| | || ||||||| ||||||||| || | ||| ||||| | ||||| || || |
Sbjct 211659 ATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAG 211718
Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043
||||||| || || || ||||||||||| ||| | |||| ||| | | || | ||
Sbjct 211719 AAAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTT 211778
Query 14044 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14103
||| | | ||| ||||| || | || || || | | || ||| |||||||
Sbjct 211779 TGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAA 211838
Query 14104 TAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14163
||||||| || | | ||||| | || || | | | ||||| || |||||||| | |
Sbjct 211839 TAGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGAC 211898
Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223
|||| |||||||| |||||||||| ||| || || || || ||||| || || ||||
Sbjct 211899 TATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTT 211958
Query 14224 CCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283
| | || ||||| | ||||| || |||| |||||||| ||||| |||| ||
Sbjct 211959 CTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAAC 212018
Query 14284 TAGCTGCAAAAAATGCCA 14301
| |||||||| || ||||
Sbjct 212019 TTGCTGCAAAGAAAGCCA 212036
>seq111
Length=7367144
Score = 120 bits (132), Expect = 3e-22
Identities = 279/417 (67%), Gaps = 9/417 (2%)
Strand=Plus/Plus
Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952
|||||||| || ||||||||||| || |||||||| | || | ||||| || | ||||
Sbjct 4918147 CCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTTC 4918206
Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012
|| | ||| ||||||| ||||| || || ||| |||| | || || |||| |||||
Sbjct 4918207 TTGAGCCAGAATATTGATGCAAAAGAACCAGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 4918266
Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072
||| | ||||||| | || | ||||||| ||||| ||||| ||
Sbjct 4918267 GCTGCAACACGTTCTCTGTGGGTAGCATCTTTGTTCACAATCCAACACAAGGCCCAATCT 4918326
Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTA 14132
| | || || | | || ||| |||| || || || || | | ||||| | |||||
Sbjct 4918327 GCCTCCTTCTTGACACAAGGCATCCTTTCGATGGCGTTGAAGAGAAATTCCCTTTCTTTG 4918386
Query 14133 GT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14191
| ||| || |||| ||| ||| | ||| ||| ||||| | ||||||||||||
Sbjct 4918387 TTGTCTTTAA---CATGTGTCAGTAAAGAGATTATCCATGTCAGAATATATGTTTTCCAT 4918443
Query 14192 AGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCT 14251
||| || || || ||||| ||||| | ||| | ||| ||||| | | ||
Sbjct 4918444 AGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCTTGAACTTCTTGGACACATTG 4918500
Query 14252 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14306
|| |||| |||| || |||||| ||| | |||||||| || | | ||||||
Sbjct 4918501 CTCCACCAAGTTTTTATCAACTATGCCACGGCATGCTGCAAAGAAAGTCAGAATATG 4918557
>seq22
Length=27210278
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 23195309 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 23195367
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 23195368 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 23195427
Query 13643 CATAAAATCAAATGGATT 13660
|||||| |||||||||||
Sbjct 23195428 CATAAAGTCAAATGGATT 23195445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479711893132400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |