Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq37 284 1e-71 seq111 120 3e-22 seq22 98.7 1e-15 >seq37 Length=19344684 Score = 284 bits (314), Expect = 1e-71 Identities = 508/738 (69%), Gaps = 4/738 (1%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| | || ||||| || |||||||||||||| || ||| Sbjct 211301 GACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCT 211360 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| ||||| |||||||| ||||||||||| | | || || | | || Sbjct 211361 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTAAAA 211420 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || ||||| | | | ||| || || | ||||||||| ||||| ||||| | ||| Sbjct 211421 CCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAA 211480 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || ||||| | | || | || || | ||| || ||| Sbjct 211481 TTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACA 211540 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 13863 || || || | || || | || |||| | || || | | | | ||||| | Sbjct 211541 GCA-CTGATA-ATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGA 211598 Query 13864 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13923 | || | || || |||||||| || | ||||||||||| | | ||||||| || |||| Sbjct 211599 ACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAA 211658 Query 13924 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGG 13983 |||| | || ||||||| ||||||||| || | ||| ||||| | ||||| || || | Sbjct 211659 ATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAG 211718 Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043 ||||||| || || || ||||||||||| ||| | |||| ||| | | || | || Sbjct 211719 AAAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTT 211778 Query 14044 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14103 ||| | | ||| ||||| || | || || || | | || ||| ||||||| Sbjct 211779 TGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAA 211838 Query 14104 TAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14163 ||||||| || | | ||||| | || || | | | ||||| || |||||||| | | Sbjct 211839 TAGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGAC 211898 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 |||| |||||||| |||||||||| ||| || || || || ||||| || || |||| Sbjct 211899 TATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTT 211958 Query 14224 CCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | | || ||||| | ||||| || |||| |||||||| ||||| |||| || Sbjct 211959 CTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAAC 212018 Query 14284 TAGCTGCAAAAAATGCCA 14301 | |||||||| || |||| Sbjct 212019 TTGCTGCAAAGAAAGCCA 212036 >seq111 Length=7367144 Score = 120 bits (132), Expect = 3e-22 Identities = 279/417 (67%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 |||||||| || ||||||||||| || |||||||| | || | ||||| || | |||| Sbjct 4918147 CCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTTC 4918206 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || | ||| ||||||| ||||| || || ||| |||| | || || |||| ||||| Sbjct 4918207 TTGAGCCAGAATATTGATGCAAAAGAACCAGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 4918266 Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072 ||| | ||||||| | || | ||||||| ||||| ||||| || Sbjct 4918267 GCTGCAACACGTTCTCTGTGGGTAGCATCTTTGTTCACAATCCAACACAAGGCCCAATCT 4918326 Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTA 14132 | | || || | | || ||| |||| || || || || | | ||||| | ||||| Sbjct 4918327 GCCTCCTTCTTGACACAAGGCATCCTTTCGATGGCGTTGAAGAGAAATTCCCTTTCTTTG 4918386 Query 14133 GT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14191 | ||| || |||| ||| ||| | ||| ||| ||||| | |||||||||||| Sbjct 4918387 TTGTCTTTAA---CATGTGTCAGTAAAGAGATTATCCATGTCAGAATATATGTTTTCCAT 4918443 Query 14192 AGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCT 14251 ||| || || || ||||| ||||| | ||| | ||| ||||| | | || Sbjct 4918444 AGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCTTGAACTTCTTGGACACATTG 4918500 Query 14252 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14306 || |||| |||| || |||||| ||| | |||||||| || | | |||||| Sbjct 4918501 CTCCACCAAGTTTTTATCAACTATGCCACGGCATGCTGCAAAGAAAGTCAGAATATG 4918557 >seq22 Length=27210278 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 23195309 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 23195367 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 23195368 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 23195427 Query 13643 CATAAAATCAAATGGATT 13660 |||||| ||||||||||| Sbjct 23195428 CATAAAGTCAAATGGATT 23195445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479711893132400