Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq37 262 4e-65 seq111 107 2e-18 seq22 89.7 5e-13 >seq37 Length=19344684 Score = 262 bits (290), Expect = 4e-65 Identities = 502/737 (68%), Gaps = 2/737 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| | || ||||| || ||||| |||||||| || ||| Sbjct 211301 GACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCT 211360 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| ||||| |||||||| || |||||||| | | || || | | || Sbjct 211361 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTAAAA 211420 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || ||||| | | | ||| || || | ||||||||| ||||| ||||| | ||| Sbjct 211421 CCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAA 211480 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || ||||| | | ||| | || || | ||| || ||| Sbjct 211481 TTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACA 211540 Query 13594 GCCTCGTTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAA 13652 || | | || || ||||| | | || | || || | | | | ||||| || Sbjct 211541 GCACTGATAATTATTTCTCTTACTC-TCTCCTCTGATGGTTTGTGTACTTGGTGTTTGAA 211599 Query 13653 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 13712 || | || || |||||||| || | ||||||||||| | | ||||||| || ||||| Sbjct 211600 CATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAA 211659 Query 13713 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 13772 ||| | || ||||||| ||||||||| || | ||| ||||| | || || || || || Sbjct 211660 TGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGA 211719 Query 13773 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT 13832 |||||| || || || ||||||||||| ||| | |||| ||| | | || | ||| Sbjct 211720 AAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTT 211779 Query 13833 GTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGAT 13892 || | ||| ||||| || | || || || | | || ||| ||||| || Sbjct 211780 GTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAAT 211839 Query 13893 TGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 13952 |||||||| | | |||| | || || | | | ||||| || |||||||| | || Sbjct 211840 AGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACT 211899 Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 ||| |||||||| |||||||||| || || || || || ||||| ||||| ||||| Sbjct 211900 ATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTC 211959 Query 14013 TGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACT 14072 || || || || | ||||| || ||||||||||||| || || |||| ||| Sbjct 211960 TGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACT 212019 Query 14073 AGCTGCAAAAAATGCCA 14089 |||||||| || |||| Sbjct 212020 TGCTGCAAAGAAAGCCA 212036 >seq111 Length=7367144 Score = 107 bits (118), Expect = 2e-18 Identities = 276/417 (66%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 |||||||| || ||||||||||| || |||||||| | || | ||||| || | |||| Sbjct 4918147 CCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTTC 4918206 Query 13741 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800 || | ||| ||||||| || || || || ||| |||| | || || |||| ||||| Sbjct 4918207 TTGAGCCAGAATATTGATGCAAAAGAACCAGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 4918266 Query 13801 GCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCA 13860 ||| | ||||||| | || | |||||| ||||| ||||| || Sbjct 4918267 GCTGCAACACGTTCTCTGTGGGTAGCATCTTTGTTCACAATCCAACACAAGGCCCAATCT 4918326 Query 13861 GAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTA 13920 | | || || | | || ||| ||||||| || ||||| | | |||| | ||||| Sbjct 4918327 GCCTCCTTCTTGACACAAGGCATCCTTTCGATGGCGTTGAAGAGAAATTCCCTTTCTTTG 4918386 Query 13921 GT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTAT 13979 | ||| || |||| ||| ||| | ||| ||| ||||| | ||||||||| || Sbjct 4918387 TTGTCTTTAA---CATGTGTCAGTAAAGAGATTATCCATGTCAGAATATATGTTTTCCAT 4918443 Query 13980 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCT 14039 ||| || || || ||||| || || | ||||| ||| || || | | || Sbjct 4918444 AGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCTTGAACTTCTTGGACACATTG 4918500 Query 14040 TTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AATATG 14094 || ||||||||| || ||| || ||| | |||||||| || | | |||||| Sbjct 4918501 CTCCACCAAGTTTTTATCAACTATGCCACGGCATGCTGCAAAGAAAGTCAGAATATG 4918557 >seq22 Length=27210278 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 23195309 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 23195367 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 23195368 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 23195427 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || |||||||| Sbjct 23195428 CATAAAGTCAAATGGATT 23195445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 23199825 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 23199884 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 23199885 AAGCCATAGAAACAGCGGGCTTCTG 23199909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478572731381040