Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq37 349 5e-91 seq5 239 6e-58 seq111 167 3e-36 seq9 120 4e-22 seq1056 93.3 6e-14 seq22 91.5 2e-13 seq3 89.7 7e-13 >seq37 Length=19344684 Score = 349 bits (386), Expect = 5e-91 Identities = 579/829 (70%), Gaps = 13/829 (2%) Strand=Plus/Plus Query 41694 GACAAATATCGGCATTTAT---GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGT 41750 || ||||| |||| ||| ||| |||| |||||| || | || | |||| ||| | Sbjct 211230 GAAAAATAAAGGCACATATTCAGTTGATTTAGAAGTCAGCACCCAAGGTAAAAGAATTCT 211289 Query 41751 CTTCTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAAT 41807 || | || ||||| |||||||| | || || | ||| || | || || || || | Sbjct 211290 CTGTTGGACTTGACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGT 211349 Query 41808 TAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAA 41867 |||| |||||||||| ||| ||||| ||||| || ||||| ||||| || | ||| Sbjct 211350 TAGTGTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAA 211409 Query 41868 tttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCA 41927 | |||| |||| ||| || | ||| ||||| | || || || ||| |||| Sbjct 211410 CCCTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCA 211469 Query 41928 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTT 41987 | | |||||||| || || || || || || | ||| ||||||| || || |||| Sbjct 211470 TTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTT 211529 Query 41988 CAATAGAGACCGCGTCTGTTA-TAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT 42046 | || || || ||| || | || ||||||| | || || ||| | | | Sbjct 211530 CCATCCGAACAGCA-CTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACT 211588 Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 ||||| ||||||| || |||||||| ||||| | |||||||||||| | | | | | Sbjct 211589 TGGTGTTTGAACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGT 211648 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 || || ||||| ||||| || ||||| || || || || || ||||| ||||| || ||| Sbjct 211649 TCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCA 211708 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAA-GTCTCTCTCCATA 42225 || || |||||||||||||| ||||| ||||| |||||||| || || | || ||||| Sbjct 211709 AAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGT-TCACCATA 211767 Query 42226 ---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | | | |||| | ||| |||||||| |||||||| || |||||||| Sbjct 211768 GGTAGCCTCTTTGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGG 211827 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 ||||||||| || ||||| |||||| | | |||| || |||||| | || || || Sbjct 211828 CATCGTTTCAATAGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTC 211887 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || | |||||||| ||||| ||||| ||||||| |||||||| || || || ||||| Sbjct 211888 AATAAGGAGACTATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAA 211947 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCAC 42462 ||| ||| || || | ||| |||||| | |||||| || | || ||||| || || Sbjct 211948 ACAGTGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTAC 212007 Query 42463 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 42511 ||| || | ||| |||||||| || |||| || || |||||| ||| Sbjct 212008 TATGCCATAACTTGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTAT 212056 >seq5 Length=50794693 Score = 239 bits (264), Expect = 6e-58 Identities = 563/840 (67%), Gaps = 14/840 (2%) Strand=Plus/Minus Query 72024 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTC 72083 || |||||| |||||||| ||||||||||||| | ||| ||||||||| || || Sbjct 46265805 TCATTTCATGAAGAGATCTAGAATCCAAAGAGCAAAAAA--GATCTCTGGCATGCTGTTC 46265748 Query 72084 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 72143 | |||||| ||||||| || | ||| | || | | || || |||| || || || Sbjct 46265747 TTTCTTTCCTATATTCTTCTTTAAATCAAACAATTCAAAGATGTCTAAATGTCAAGGCTC 46265688 Query 72144 CAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 72203 || ||| || || | |||| || | ||||| || || |||| | |||| ||| || Sbjct 46265687 CAGGTAAATAGCAAATGCTCCAGGACCCTTGTTCCCACCTCGATCCAGATATCAAGCTGT 46265628 Query 72204 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGAT 72263 ||| ||||| ||||||| ||| | || |||||||| || || | ||| || Sbjct 46265627 GTTGTTATATACTCTCAGCATCAGTGCAAGGCCATTGGAATTGCCCTTAGACCCATCAAT 46265568 Query 72264 ATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 ||||| ||| | || | |||| || | | | ||| ||||| || || |||||| Sbjct 46265567 GTAGCTGCCAGTAGCCCAAATACAACTCAAAGCAACACCAATTCCTCCAGCAGATTTAGA 46265508 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 72383 || || || ||| | |||| || ||||| ||||| || || || || || ||||| | Sbjct 46265507 AATCAACGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCGTCTTTCATGCT 46265448 Query 72384 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 72443 || |||||||||||||| | ||| | | | || || ||| | || || || || || Sbjct 46265447 CAGAAGAAAACAGCTAGAAAGTTGTGGGTGGTTGGTACCAGCACTGAAGAAAGTTGGTGA 46265388 Query 72444 AGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT---ACGTCTCAATAGCTGATTCTAT 72500 ||| || |||||||| | |||| || ||| ||| || ||||| ||| || || Sbjct 46265387 AGCATGAGTAAACCACCTCTCAGGAAGAAGACTGTCTGCTGTTTCAATTGCTACATCAAT 46265328 Query 72501 ATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGA 72559 ||| | ||| || || || || | || | ||| ||||||| ||| ||| ||||| | | Sbjct 46265327 ATCTTCTTTGTTG-ATCCCAACAGATACTCTCATCAACATATACTGTGGTATTTCAGCCA 46265269 Query 72560 TCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 72619 || ||| || |||||||| || || | | | ||||||||||| || |||| Sbjct 46265268 CTTTTCCATTGATCTTCAACAAATAAGACAACTGTAGCATCTTAAAACCAAAGTAATTGT 46265209 Query 72620 ATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTA 72679 | || || ||| | | |||||| | ||||| | | ||| |||| ||| | Sbjct 46265208 AAGAGAAATCTTAGCCACAGATAATAGCAGAATTCAAGTGATCTTTATTGGCCAAAACAA 46265149 Query 72680 TATCCA-TGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATA 72737 |||||| || || |||| | | || ||||| |||| ||| | ||| | || | Sbjct 46265148 TATCCAGTGCTG--ACTTGGCCACCATGGGAGAGCGTTTGTCATGATGTGGACTTACGCA 46265091 Query 72738 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGA 72797 ||| | | || |||||||| ||||| || | || |||||||| ||||| | || || Sbjct 46265090 GTTATAGAGGTCTTCCATCACATCACTGAACACTTCATTTGTTTCTTTGTGCAAGTTAGA 46265031 Query 72798 TACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGC 72857 || || | || || || || || ||||| | || || | ||||| ||| |||||| Sbjct 46265030 GACAGCAGTCCTAGCTGCCAGGATAGCATAGACAGGGTGCTTAGTAGT-CAA--GGCTGC 46264974 >seq111 Length=7367144 Score = 167 bits (184), Expect = 3e-36 Identities = 303/436 (69%), Gaps = 12/436 (3%) Strand=Plus/Plus Query 42085 ACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTT 42144 ||||||||| || ||||| | ||| |||||||| ||||| || | ||| || | | || Sbjct 4918146 ACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTT 4918205 Query 42145 TTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAA 42204 || ||||| ||||| || ||||| || |||||| ||||| | |||||||||| ||||| Sbjct 4918206 CTTGAGCCAGAATATTGATGCAAAAGAACCAGAAGAGAAGGTGCCTTCTACTGTGGCAAA 4918265 Query 42205 GGC---AATAAGT-CTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAAT 42260 ||| || | || |||| | || | | ||| ||||| ||||||| Sbjct 4918266 GGCTGCAACACGTTCTCTGTGGGTAGCAT-CTTTGTTCACAATCCAACACAAGGCCCAAT 4918324 Query 42261 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCAT 42320 | |||| ||| || |||||||||||| |||| ||||| || |||||| | | |||| | Sbjct 4918325 CTGCCTCCTTCTTGACACAAGGCATCCTTTCGATGGCGTTGAAGAGAAATTCCCTTTCTT 4918384 Query 42321 TACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAA 42380 | | |||||||| |||| || | || ||| ||| ||| || |||| |||||||| | Sbjct 4918385 TGTTGTCTTTAAC--ATGTGTCAGTAAAGAGATTATCCATGTCAGAATATATGTTTTCCA 4918442 Query 42381 TGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC-TGTACAAAAT 42439 | || || || || || ||||| || || || ||| | || ||||| || || | || Sbjct 4918443 TAGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCTTGAACTTCTTGGAC-ACAT 4918498 Query 42440 CGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGT 42499 | || | || |||| | ||||| || | |||||||| || | || | ||| Sbjct 4918499 TGCTCCACCAAGTTTTTATCAACTATGCCACGGCATGCTGCAAAGAAAGTCAGAATATGG 4918558 Query 42500 TTTATAAAATATTTTT 42515 |||||||||| ||| Sbjct 4918559 GATATAAAATATCTTT 4918574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 41709 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAA 41765 ||| | || |||| ||||| |||| |||| |||| ||| ||| || | | ||| | Sbjct 4918983 TTAAGCTTATTTAGAAGTCGGCATCCAAAGTAAAAGAATTATCTATTTTACTTGGCATCA 4918924 Query 41766 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATG 41825 || |||| ||||| || ||||| || | || || || || ||| |||||||||||| || Sbjct 4918923 CTGCCATCTTTTGATACTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTG 4918864 Query 41826 ATATATTTTCCATGAAATC 41844 | ||||| |||||||| || Sbjct 4918863 AAATATTCTCCATGAAGTC 4918845 >seq9 Length=44311105 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| |||| || || ||||| || | Sbjct 1875011 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 1875070 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| |||||||| ||||| || || || || |||||||| || | | || | Sbjct 1875071 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTTT 1875130 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 1875131 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 1875181 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| |||||||||||||| | ||| |||||||||| | || Sbjct 1896021 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAAAAAAGATCTCTGGCACGCTGT 1896080 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 1896081 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 1896140 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 1896141 TCCAGGTAAATAGC 1896154 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 1878112 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATA 1878171 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || |||||||| || || || ||||| || || | | || | Sbjct 1878172 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 1878231 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 1878232 CTGTTTCTTATACCAT 1878247 >seq1056 Length=1934 Score = 93.3 bits (102), Expect = 6e-14 Identities = 240/360 (67%), Gaps = 17/360 (5%) Strand=Plus/Plus Query 39799 CCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTCC 39858 ||||| || ||||| ||| | || || || || ||| | || ||| |||||||| Sbjct 686 CCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACTTCTTCT 745 Query 39859 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTACA 39918 | |||||| ||| | || |||| | | || ||||| || |||| ||| | | || || Sbjct 746 ATTTCTGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCCCTTTTTTTGACT 805 Query 39919 TTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCG 39978 | || | ||| ||| |||| || | || || | ||||| ||||||||||| Sbjct 806 TCAAACTTTTCTTTGCCAAAATTATACAGCACAACACCAACATTTCCTCTATAATCTTCA 865 Query 39979 TCTATTACACCGCCTCCTATATCAATA---CCTTTTAGGGACAGACCAGACCTAGGAGCT 40035 ||||| ||||| |||||| ||||||| |||| | || ||||||| |||||| Sbjct 866 TCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCAGACCGTGGAGCT 925 Query 40036 ATTCTACCATAGCAGAACTTAGGCATGGACATACTA-----ATATCTGTCTTAATTAACT 40090 | ||| |||| | || || | ||| |||| || ||||| || | || Sbjct 926 ACTCTTTCATAAC---ACCCAG--AAGGAAGCACTATCTGTATGTCTGTTTTCA-CAAGA 979 Query 40091 GTCTTTCTCC--CGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCAGCGGC 40148 || ||||||| || ||||| || ||||| || || || |||| || || || ||||| Sbjct 980 GT-TTTCTCCATAGGTGGGATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 1038 >seq22 Length=27210278 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 |||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| Sbjct 23195307 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 23195366 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || || || || || | || || || || |||||||||||||||| ||| ||||| | Sbjct 23195367 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 23195426 Query 41835 CCATGAAATCAAACGGATT 41853 |||| || ||||| ||||| Sbjct 23195427 CCATAAAGTCAAATGGATT 23195445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 23199818 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 23199877 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | ||| || |||| ||| |||||| | |||||| || Sbjct 23199878 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 23199937 >seq3 Length=58292249 Score = 89.7 bits (98), Expect = 7e-13 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 39843 AGATTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCT 39902 || ||| |||||||| | |||||| ||| | || |||| | | || || || || |||| Sbjct 29419078 AGCTTGAACTTCTTCTATTTCTGGGTAAAAAATCCGTTCACAAATGAGTTGTGCAATTCG 29419137 Query 39903 ATCTCCCGTATTTACATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTT 39962 ||| | | || || | || | ||| ||| ||||| || || || | ||| Sbjct 29419138 ATCATCTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTGCAACACCAACGTT 29419197 Query 39963 TCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAATA---CCTTTTAGGGACAG 40019 ||| ||||||||||| ||||| ||||| |||||| ||||||| |||| | || Sbjct 29419198 TCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTTCAGCCAA 29419257 Query 40020 ACCAGACCTAGGAGCTATTCTACCATAGCA 40049 ||||||| |||||||| ||| || || || Sbjct 29419258 GCCAGACCGAGGAGCTACTCTTCCGTAACA 29419287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671116666501360