Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq22 87.8 3e-12 >seq22 Length=27210278 Score = 87.8 bits (96), Expect = 3e-12 Identities = 194/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 70334 GACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATT 70393 ||| ||||||| ||| | || || ||||| | ||||| | || | ||| ||||||| Sbjct 26912739 GACGTGGGCCTAGGTATGCCTTTCAACATCACCAGCTACGCCCTGCTCACGTACATGATC 26912680 Query 70394 GCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTG 70453 ||||| || |||||||| | || || ||||| | | || || || || | Sbjct 26912679 ATGCACATCACGGGCCTGAAGCCAGGTGATTTTGTACATGCTTTGGGAGATGCACATATT 26912620 Query 70454 TATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCC 70513 || | ||||||||||||||| | || | || || | | || | |||||||| || Sbjct 26912619 TACCTGAATCACATCGAGCCACTGAAAATTCAGCTTCAGTGAGAACGCAGACCTTTCCCA 26912560 Query 70514 AAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATA 70573 ||||| || || ||| |||||||| || ||||| || || ||||| |||| Sbjct 26912559 AAGCTCAAGATTCTTCGAAAAGTTGAGAAAATTGATGACTTCAAAGCTGAAGACTTTAAG 26912500 Query 70574 ATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTAG 70624 | |||| ||| ||| |||| | ||| |||| ||||||||||| Sbjct 26912499 GTTGAAGGGTACAATCTGCACCCAACTATTAAAATGGAAATGGCTGTTTAG 26912449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741034318937360