Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq37 271 7e-68
seq132 93.3 4e-14
>seq37
Length=19344684
Score = 271 bits (300), Expect = 7e-68
Identities = 513/750 (68%), Gaps = 10/750 (1%)
Strand=Plus/Plus
Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902
||||||| || ||| | ||||| | | ||||| || ||||| ||||| || ||||
Sbjct 211299 TTGACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTC 211358
Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958
|||| | |||||||| |||||||| || || ||||| | || | || | |
Sbjct 211359 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTA- 211417
Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018
| |||| | ||| || | | |||||| || |||||||| ||||| || ||||||| |
Sbjct 211418 --AAACCC-AGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGA 211474
Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078
|| ||||| || || | || ||||||| || || || | || | | ||| ||
Sbjct 211475 GTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATC 211534
Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138
||| || ||||| ||| ||||||| | | |||| |||| | | | | ||
Sbjct 211535 CGAACAGCACTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGT 211594
Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198
|| ||||||| || || ||||||||||| || || |||||||| | | || || ||
Sbjct 211595 TTGAACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTA 211654
Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258
|||||||| || || ||||| || |||||||| || | ||| ||||| | ||||| |||
Sbjct 211655 GAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 211714
Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCT-TTCACCATACGTACT 13317
|| ||||| || || ||||| ||||| ||||| ||| |||| | ||||||||| |||
Sbjct 211715 CCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT-GCAACGTGTTCACCATAGGTAGC 211773
Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATT 13377
| ||| | | | ||| |||||| | ||| || | || || || ||| |
Sbjct 211774 CTCTTTGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT 211833
Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437
||| || || || || | | | | |||| || ||| || ||||| || || |
Sbjct 211834 TTCAATAGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAG 211893
Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497
| ||||| ||||| ||||| || |||| ||| || |||||||| ||||| |||||
Sbjct 211894 GAGACTATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTG 211953
Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557
|| |||| | ||||||||| | ||||| || | |||||||| || ||||| ||
Sbjct 211954 GGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCC 212013
Query 13558 GTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587
| ||| || ||||| ||||| || | |||
Sbjct 212014 ATAACTTGCTGCAAAGAAAGCCAGAACGTG 212043
>seq132
Length=5918258
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| || |
Sbjct 980252 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 980193
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || || || || || | |||||| || || || || |
Sbjct 980192 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 980133
Query 13293 CTATCAACCTTTCACC 13308
| | || ||||| ||
Sbjct 980132 CCACCACTCTTTCCCC 980117
Score = 89.7 bits (98), Expect = 4e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||| ||||| || |||||||||||||||| ||||| ||||||
Sbjct 989917 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATGTTTTCC 989858
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| ||||||||||
Sbjct 989857 ATAAAATCAAAAGGATTTT 989839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430968291521772
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |