Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq37 271 7e-68 seq132 93.3 4e-14 >seq37 Length=19344684 Score = 271 bits (300), Expect = 7e-68 Identities = 513/750 (68%), Gaps = 10/750 (1%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||| | | ||||| || ||||| ||||| || |||| Sbjct 211299 TTGACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTC 211358 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| | |||||||| |||||||| || || ||||| | || | || | | Sbjct 211359 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTA- 211417 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 | |||| | ||| || | | |||||| || |||||||| ||||| || ||||||| | Sbjct 211418 --AAACCC-AGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGA 211474 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || ||||| || || | || ||||||| || || || | || | | ||| || Sbjct 211475 GTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATC 211534 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 ||| || ||||| ||| ||||||| | | |||| |||| | | | | || Sbjct 211535 CGAACAGCACTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGT 211594 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || ||||||| || || ||||||||||| || || |||||||| | | || || || Sbjct 211595 TTGAACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTA 211654 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 |||||||| || || ||||| || |||||||| || | ||| ||||| | ||||| ||| Sbjct 211655 GAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 211714 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCT-TTCACCATACGTACT 13317 || ||||| || || ||||| ||||| ||||| ||| |||| | ||||||||| ||| Sbjct 211715 CCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT-GCAACGTGTTCACCATAGGTAGC 211773 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATT 13377 | ||| | | | ||| |||||| | ||| || | || || || ||| | Sbjct 211774 CTCTTTGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT 211833 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||| || || || || | | | | |||| || ||| || ||||| || || | Sbjct 211834 TTCAATAGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAG 211893 Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 | ||||| ||||| ||||| || |||| ||| || |||||||| ||||| ||||| Sbjct 211894 GAGACTATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTG 211953 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 || |||| | ||||||||| | ||||| || | |||||||| || ||||| || Sbjct 211954 GGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCC 212013 Query 13558 GTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 | ||| || ||||| ||||| || | ||| Sbjct 212014 ATAACTTGCTGCAAAGAAAGCCAGAACGTG 212043 >seq132 Length=5918258 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 980252 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 980193 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || || || | Sbjct 980192 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 980133 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 980132 CCACCACTCTTTCCCC 980117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||||||||||| ||||| |||||| Sbjct 989917 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATGTTTTCC 989858 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 989857 ATAAAATCAAAAGGATTTT 989839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430968291521772