Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq38 122 8e-23
seq1056 102 7e-17
seq3 89.7 5e-13
>seq38
Length=19171412
Score = 122 bits (134), Expect = 8e-23
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933
|| ||||| || ||||| || | ||||||||||| ||||||||| |||| |||||||||
Sbjct 18494167 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 18494226
Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993
|| || || || || || | || |||||||| |||||||| ||||| ||||| ||||||
Sbjct 18494227 CCCCAAGCTGAGAACCATGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAAAG 18494286
Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025
|| || || | | || | ||||| |||||
Sbjct 18494287 CTGAAGACTTTCAGGCTGAGGCTGCGACGCTG 18494318
>seq1056
Length=1934
Score = 102 bits (112), Expect = 7e-17
Identities = 175/254 (69%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329
|||||||| ||||| | ||| |||| | | |||||| | || ||||| || ||
Sbjct 716 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGGTAAAAAATCCGTTCACAAATG 775
Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389
||||| || || | || | || || || ||||| | || || || ||| |||||
Sbjct 776 AGCTGTGCAATTCGATCCCTTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTATACAGC 835
Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449
|| || || ||||| |||| || ||||| || || || ||||| || || || ||||||
Sbjct 836 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 895
Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509
||||| | || | ||| || ||||| |||| | | | || || |||| || ||| |
Sbjct 896 TGTTTTGCAGCCAAGCCAGACCGTGGAGCTACTCTTTCATAACACCCAGAAGGAAGCACT 955
Query 5510 ATCAGAAGGTCAGT 5523
||| | | ||| ||
Sbjct 956 ATCTGTATGTCTGT 969
>seq3
Length=58292249
Score = 89.7 bits (98), Expect = 5e-13
Identities = 172/254 (68%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329
|||||||| |||| | ||| |||| | | |||||| | || ||||| || ||
Sbjct 29419064 TCGGTGTCAACCAAAGCTTGAACTTCTTCTATTTCTGGGTAAAAAATCCGTTCACAAATG 29419123
Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389
|| || || || | || | || || || ||||| | || || || ||||||||
Sbjct 29419124 AGTTGTGCAATTCGATCATCTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 29419183
Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449
| || || || || |||| || ||||| || || || ||||| || || || ||||||
Sbjct 29419184 GCAACACCAACGTTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 29419243
Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509
||||| | || | ||| || || || |||| | |||||| || |||| || ||| |
Sbjct 29419244 TGTTTTTCAGCCAAGCCAGACCGAGGAGCTACTCTTCCGTAACACCCAGAAGGAAGCGCT 29419303
Query 5510 ATCAGAAGGTCAGT 5523
||| | | ||| ||
Sbjct 29419304 ATCTGTATGTCTGT 29419317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447735366780320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |