Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq38 122 8e-23 seq1056 102 7e-17 seq3 89.7 5e-13 >seq38 Length=19171412 Score = 122 bits (134), Expect = 8e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 18494167 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 18494226 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || || | || |||||||| |||||||| ||||| ||||| |||||| Sbjct 18494227 CCCCAAGCTGAGAACCATGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAAAG 18494286 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || | | || | ||||| ||||| Sbjct 18494287 CTGAAGACTTTCAGGCTGAGGCTGCGACGCTG 18494318 >seq1056 Length=1934 Score = 102 bits (112), Expect = 7e-17 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||||| | || ||||| || || Sbjct 716 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGGTAAAAAATCCGTTCACAAATG 775 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || | || || || ||||| | || || || ||| ||||| Sbjct 776 AGCTGTGCAATTCGATCCCTTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTATACAGC 835 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 836 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 895 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || ||||| |||| | | | || || |||| || ||| | Sbjct 896 TGTTTTGCAGCCAAGCCAGACCGTGGAGCTACTCTTTCATAACACCCAGAAGGAAGCACT 955 Query 5510 ATCAGAAGGTCAGT 5523 ||| | | ||| || Sbjct 956 ATCTGTATGTCTGT 969 >seq3 Length=58292249 Score = 89.7 bits (98), Expect = 5e-13 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| |||| | ||| |||| | | |||||| | || ||||| || || Sbjct 29419064 TCGGTGTCAACCAAAGCTTGAACTTCTTCTATTTCTGGGTAAAAAATCCGTTCACAAATG 29419123 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 || || || || | || | || || || ||||| | || || || |||||||| Sbjct 29419124 AGTTGTGCAATTCGATCATCTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 29419183 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 | || || || || |||| || ||||| || || || ||||| || || || |||||| Sbjct 29419184 GCAACACCAACGTTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 29419243 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || || || |||| | |||||| || |||| || ||| | Sbjct 29419244 TGTTTTTCAGCCAAGCCAGACCGAGGAGCTACTCTTCCGTAACACCCAGAAGGAAGCGCT 29419303 Query 5510 ATCAGAAGGTCAGT 5523 ||| | | ||| || Sbjct 29419304 ATCTGTATGTCTGT 29419317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447735366780320