Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq22 114 9e-21 seq12 105 5e-18 >seq22 Length=27210278 Score = 114 bits (126), Expect = 9e-21 Identities = 181/257 (70%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| |||| | || | || |||||| | ||||| || || | ||||| ||||| Sbjct 26912560 TGGGAAAGG-TCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 26912618 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | || || ||||||| || || ||||| || || || | || || || | || Sbjct 26912619 AAATATGTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCA 26912678 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 |||||||||||||| || |||||||| |||||| || || | || | |||| || Sbjct 26912679 TGATCATGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGT 26912738 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | | || |||||||| |||||||| || ||||| || |||||| ||||| || Sbjct 26912739 -CTCTTGATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAG 26912797 Query 25627 ATGGTGTAGCACGGAGG 25643 | || | ||| || || Sbjct 26912798 AGGGCATGGCATGGGGG 26912814 >seq12 Length=39782659 Score = 105 bits (116), Expect = 5e-18 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| ||||||||||| || || || || || | ||| Sbjct 25685097 CATATCTCTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 25685038 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || ||||| ||| || | || ||| |||||| |||||||| ||| |||||||| | Sbjct 25685037 CCCTTCTTCTCTG-GCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCAT 25684979 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945 ||||||| || || ||||| || |||||||| | |||||||| || |||| Sbjct 25684978 CCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 25684926 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||||||||| || ||||||||||||||| || || || || | |||||| Sbjct 25689291 GCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCCATG 25689232 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || || ||||| || ||||| || || ||||| ||| |||||| ||||| || Sbjct 25689231 T-CTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 25689173 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||| ||||| || || || || Sbjct 25689172 GAGGGCATGGCATGGAGGCAGCGCCATCAG 25689143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340126465383078