Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq22 114 9e-21
seq12 105 5e-18
>seq22
Length=27210278
Score = 114 bits (126), Expect = 9e-21
Identities = 181/257 (70%), Gaps = 2/257 (1%)
Strand=Plus/Plus
Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446
||||||||| |||| | || | || |||||| | ||||| || || | ||||| |||||
Sbjct 26912560 TGGGAAAGG-TCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 26912618
Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506
| | || || ||||||| || || ||||| || || || | || || || | ||
Sbjct 26912619 AAATATGTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCA 26912678
Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566
|||||||||||||| || |||||||| |||||| || || | || | |||| ||
Sbjct 26912679 TGATCATGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGT 26912738
Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626
| | || |||||||| |||||||| || ||||| || |||||| ||||| ||
Sbjct 26912739 -CTCTTGATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAG 26912797
Query 25627 ATGGTGTAGCACGGAGG 25643
| || | ||| || ||
Sbjct 26912798 AGGGCATGGCATGGGGG 26912814
>seq12
Length=39782659
Score = 105 bits (116), Expect = 5e-18
Identities = 130/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832
||| || |||| ||||| || |||| ||||||||||| || || || || || | |||
Sbjct 25685097 CATATCTCTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 25685038
Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891
|| ||||| ||| || | || ||| |||||| |||||||| ||| |||||||| |
Sbjct 25685037 CCCTTCTTCTCTG-GCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCAT 25684979
Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945
||||||| || || ||||| || |||||||| | |||||||| || ||||
Sbjct 25684978 CCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 25684926
Score = 91.5 bits (100), Expect = 1e-13
Identities = 111/150 (74%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| |||||||||||||| || ||||||||||||||| || || || || | ||||||
Sbjct 25689291 GCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCCATG 25689232
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
| | || || ||||| || ||||| || || ||||| ||| |||||| ||||| ||
Sbjct 25689231 T-CTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 25689173
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655
| || | ||| ||||| || || || ||
Sbjct 25689172 GAGGGCATGGCATGGAGGCAGCGCCATCAG 25689143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340126465383078
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |