Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq234 84.2 1e-11
seq57 84.2 1e-11
seq33 84.2 1e-11
seq258 82.4 4e-11
seq23 82.4 4e-11
>seq234
Length=554799
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 252207 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 252148
Query 11528 CCG 11530
|||
Sbjct 252147 CCG 252145
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 253260 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACTGG 253319
Query 11528 CC 11529
||
Sbjct 253320 CC 253321
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 307325 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 307266
Query 11528 CC 11529
||
Sbjct 307265 CC 307264
>seq57
Length=15281321
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 3316760 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3316819
Query 11528 CCG 11530
|||
Sbjct 3316820 CCG 3316822
>seq33
Length=21137282
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 7641004 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 7641063
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 7641064 CTGAGCTAACCGGCC 7641078
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 7612638 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 7612579
Query 11528 CC 11529
||
Sbjct 7612578 CC 7612577
>seq258
Length=193273
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 80103 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 80044
Query 11528 CC 11529
||
Sbjct 80043 CC 80042
>seq23
Length=26360658
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 110378 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 110437
Query 11528 CC 11529
||
Sbjct 110438 CC 110439
Lambda K H
0.640 0.410 0.923
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261482639922136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |