Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq38 134 2e-26 >seq38 Length=19171412 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| ||||||| ||||||||||||||||||||||| || | Sbjct 18494165 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 18494224 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| || ||||| || || ||||| || ||| |||||||||||||| ||||| || | Sbjct 18494225 TGCCCCAAGCTGAGAACCATGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAA 18494284 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||||| | ||||| Sbjct 18494285 AGCTGAAGACTTTCAGGCT 18494303 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/92 (84%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||||||||||||||| |||||||| || || |||| | Sbjct 18496496 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 18496555 Query 10419 TAGAAGCATACATGACCATGAAAATTCGCAGA 10450 ||||||| |||||||| ||||| | |||||| Sbjct 18496556 TAGAAGCCTACATGACAATGAAGA--CGCAGA 18496585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547360821743360