Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq38 134 2e-26
>seq38
Length=19171412
Score = 134 bits (148), Expect = 2e-26
Identities = 113/139 (81%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| ||||||| ||||||||||||||||||||||| || |
Sbjct 18494165 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 18494224
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| || ||||| || || ||||| || ||| |||||||||||||| ||||| || |
Sbjct 18494225 TGCCCCAAGCTGAGAACCATGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAA 18494284
Query 10260 ATCTAAAGACCCTAAGGCT 10278
| || ||||| | |||||
Sbjct 18494285 AGCTGAAGACTTTCAGGCT 18494303
Score = 96.9 bits (106), Expect = 4e-15
Identities = 77/92 (84%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || ||||| |||||||||||||||||||| |||||||| || || |||| |
Sbjct 18496496 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 18496555
Query 10419 TAGAAGCATACATGACCATGAAAATTCGCAGA 10450
||||||| |||||||| ||||| | ||||||
Sbjct 18496556 TAGAAGCCTACATGACAATGAAGA--CGCAGA 18496585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547360821743360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |