Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq98 188 1e-42
seq14 123 4e-23
>seq98
Length=8319558
Score = 188 bits (208), Expect = 1e-42
Identities = 179/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| || || |||| |||||||||||| || |||| || ||||||||||||
Sbjct 8274848 GTCTGGAACAACTGCTCATCACCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 8274789
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
|||||||| ||||| |||||||| || || |||||||| |||||||||||||| |||||
Sbjct 8274788 CTGTTGTGCTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 8274729
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
| || || || || || | |||| || || || |||| ||||| |||||||| |
Sbjct 8274728 ACTTCCTGTCCCACGGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCG 8274669
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
|||| ||||||||| | ||| |||||||| || || ||||| ||||
Sbjct 8274668 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATGATCT 8274620
Score = 127 bits (140), Expect = 3e-24
Identities = 123/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | ||
Sbjct 8273703 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 8273644
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| |||||||| || ||| |||| || |||||||| | |||| ||||||||||||
Sbjct 8273643 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTGGAGCCCTGGGGATC 8273584
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185
|| |||| | || | |||||| |||||||||||
Sbjct 8273583 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 8273546
Score = 93.3 bits (102), Expect = 6e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || || ||||| || || || | ||| || ||||| || || | ||
Sbjct 8273090 ACCTTTCACACCCAGGGGAGTGGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTATA 8273031
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
||||||||| || ||||| |||||||||||| ||| | ||||| | |||||| | ||
Sbjct 8273030 ATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTTGG 8272971
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| || |||||||||| | ||| |||||
Sbjct 8272970 CGGACTCTCAATCAAATGTGCTCTGGCTGAA 8272940
Score = 87.8 bits (96), Expect = 3e-12
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| || ||||| ||||| || | |||||||| || || |
Sbjct 8275439 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCC 8275380
Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439
| | || || |||||||| | || ||| || ||| || || | || ||| |
Sbjct 8275379 AGTAACATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTAGTTCTGGTCATGAATTT 8275322
Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499
||| | || |||| || | |||||||||||| | | |||||||| | | ||||
Sbjct 8275321 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATAC 8275262
Query 9500 GATTTTGGTACTGGAA 9515
||||||||||||||||
Sbjct 8275261 GATTTTGGTACTGGAA 8275246
>seq14
Length=37227512
Score = 123 bits (136), Expect = 4e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||||||||| ||| |||| || || || || ||||| || |||||||| |||| |
Sbjct 49273 TCTTGACGATGTTAAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTATTCCGGAG 49332
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
| |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || |
Sbjct 49333 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAAGGAGCCCCAATCTCTATCATAC 49392
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || ||||| | ||| ||| || |||||| | | | |||| ||| |||||||
Sbjct 49393 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCGGGGTAGAACTCCA 49452
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| || |||||||| || | || | || || || || ||||| ||||||
Sbjct 49453 AGGCATCAATGTCTCCATACAACTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 49508
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/138 (75%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086
|| |||||||| |||| | || |||||| | || || || |||| | ||| | |
Sbjct 60441 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 60498
Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146
| |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| |
Sbjct 60499 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 60558
Query 10147 CGGGAGTGAAGGTCCTCC 10164
| || |||| ||||||
Sbjct 60559 CAGGTATGAACTTCCTCC 60576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708501011279840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |