Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq98 188 1e-42 seq14 123 4e-23 >seq98 Length=8319558 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||||||||| || |||| || |||||||||||| Sbjct 8274848 GTCTGGAACAACTGCTCATCACCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 8274789 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 |||||||| ||||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 8274788 CTGTTGTGCTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 8274729 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || || || | |||| || || || |||| ||||| |||||||| | Sbjct 8274728 ACTTCCTGTCCCACGGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCG 8274669 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 8274668 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATGATCT 8274620 Score = 127 bits (140), Expect = 3e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 8273703 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 8273644 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || |||||||| | |||| |||||||||||| Sbjct 8273643 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTGGAGCCCTGGGGATC 8273584 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | |||||| ||||||||||| Sbjct 8273583 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 8273546 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || || ||||| || || || | ||| || ||||| || || | || Sbjct 8273090 ACCTTTCACACCCAGGGGAGTGGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTATA 8273031 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||| || ||||| |||||||||||| ||| | ||||| | |||||| | || Sbjct 8273030 ATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTTGG 8272971 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || |||||||||| | ||| ||||| Sbjct 8272970 CGGACTCTCAATCAAATGTGCTCTGGCTGAA 8272940 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| || ||||| ||||| || | |||||||| || || | Sbjct 8275439 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCC 8275380 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | || || |||||||| | || ||| || ||| || || | || ||| | Sbjct 8275379 AGTAACATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTAGTTCTGGTCATGAATTT 8275322 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| || | |||||||||||| | | |||||||| | | |||| Sbjct 8275321 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATAC 8275262 Query 9500 GATTTTGGTACTGGAA 9515 |||||||||||||||| Sbjct 8275261 GATTTTGGTACTGGAA 8275246 >seq14 Length=37227512 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||||| ||| |||| || || || || ||||| || |||||||| |||| | Sbjct 49273 TCTTGACGATGTTAAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTATTCCGGAG 49332 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 49333 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAAGGAGCCCCAATCTCTATCATAC 49392 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | |||| ||| ||||||| Sbjct 49393 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCGGGGTAGAACTCCA 49452 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || |||||||| || | || | || || || || ||||| |||||| Sbjct 49453 AGGCATCAATGTCTCCATACAACTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 49508 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 60441 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 60498 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 60499 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 60558 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | || |||| |||||| Sbjct 60559 CAGGTATGAACTTCCTCC 60576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708501011279840