Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq23 183 5e-42
seq153 136 6e-28
seq225 118 2e-22
seq66 118 2e-22
seq234 82.4 1e-11
>seq23
Length=26360658
Score = 183 bits (202), Expect = 5e-42
Identities = 205/274 (75%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||| | | || || ||||| |||||||| || |||||||| |||||
Sbjct 655260 CGCCAAGCGTCATCGTAAAGTGCTACGCGATAATATCCAAGGCATTACCAAGCCGGCTAT 655319
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||| | ||||| ||||| ||||| |||| || ||| | || || ||||
Sbjct 655320 CCGACGCCTGGCTAGGCGTGGCGGAGTAAAGCGAATCTCGGGTTTGATTTACGAGGAGAC 655379
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || | ||| ||||||| ||| ||| |||| ||||| | ||| |||||
Sbjct 655380 TCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGAGATGCGGTGACCTACACCGA 655439
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||||||||| |||||||| | || || || |||| ||||||||
Sbjct 655440 GCACGCCAAGCGAAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTGAAGCGTCAAGG 655499
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
|| | | ||||| ||||| |||| | ||||
Sbjct 655500 TCGCACTCTGTATGGCTTTGGCGGTTAGTGTTCT 655533
Score = 174 bits (192), Expect = 2e-39
Identities = 195/261 (75%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| ||||||| | ||||| || |||||||| || || || ||||| |||||
Sbjct 592030 CGCTAAGCGCCATCGCAAAGTCCTTCGGGACAACATCCAGGGCATTACAAAGCCGGCTAT 591971
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| |||| || || ||||| |||||||| | ||||| | ||||||| ||||
Sbjct 591970 TCGCCGTTTGGCGCGGCGCGGTGGGGTCAAGCGCATTTCTGGTCTTATCTATGAGGAGAC 591911
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | ||| | ||| | ||| | | | |||||| | |||||| || || || ||
Sbjct 591910 TCGAGGTGTGCTTAAGGTTTTCTTGGAAAACGTTATTCGAGATGCTGTCACTTACACGGA 591851
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| ||||| ||||||||||| |||||||| |||| ||||| | |||||||| ||
Sbjct 591850 GCACGCGAAACGCAAGACTGTCACTGCCATGGATGTCGTATATGCTCTAAAACGTCAGGG 591791
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | |||||||| ||
Sbjct 591790 GCGCACTCTGTATGGTTTCGG 591770
Score = 149 bits (164), Expect = 1e-31
Identities = 182/246 (74%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | | || || |||||||||||||| || || ||||||||||| |
Sbjct 499918 CGCAAAGCGTCACCGAAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCAGCCA 499860
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || || ||||| || || || |||||||| | ||||| | ||||||| ||||
Sbjct 499859 TCCGGCGCCTTGCTCGCCGCGGCGGCGTCAAGCGCATTTCTGGCCTCATCTATGAGGAGA 499800
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | ||| ||||| | || || ||| ||| |||| ||||||| || || || |
Sbjct 499799 CCCGCGGGGTTCTGAAGGTGTTTCTGGAGAACGTGATCCGTGATGCTGTCACTTACACGG 499740
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| || ||| | ||||| | ||||| || | || || || |
Sbjct 499739 AGCACGCCAAGCGCAAGACCGTGACCGCGATGGACGTGGTCTACGCGCTCAAGCGGCAGG 499680
Query 16671 GCCGTA 16676
| ||||
Sbjct 499679 GACGTA 499674
Score = 145 bits (160), Expect = 1e-30
Identities = 191/262 (73%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| ||||||| | | || || || |||||||| |||||||||||||| || |
Sbjct 515937 CGCCAAGCGCCATCGCA-AGGTATTGCGTGACAACATCCAGGGAATCACCAAGCCCGCCA 515995
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||||| || ||||| ||||||||| | ||||| | | || || ||||
Sbjct 515996 TCCGGCGCTTGGCTCGCCGCGGTGGCGTCAAGCGTATTTCTGGCCTCATTTACGAGGAGA 516055
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||| | || ||||| | ||||| | | ||||||| |||||| || ||| || |
Sbjct 516056 CTCGCGGAGTGCTGAAGGTTTTCCTGGAAAATGTTATCCGCGATGCTGTCACCTACACGG 516115
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
| ||||| ||||| ||||| ||||| ||||||| | ||||| || | || || || |
Sbjct 516116 AACACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 516175
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
| || | | ||||| || ||
Sbjct 516176 GACGCACTCTGTATGGCTTCGG 516197
Score = 116 bits (128), Expect = 6e-22
Identities = 184/261 (70%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| | | || || || |||||||| || ||||||||||| || ||
Sbjct 661616 GCCAAGCGCCACCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 661558
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || || || || || | |||||||| | ||||| || |||| || ||||
Sbjct 661557 CCGGCGCCTTGCCCGCCG----GATGTCAAGCGGATATCTGGTCTGATCTACGAGGAGAC 661502
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||| | ||| ||| |||| ||| ||| || |||||| ||
Sbjct 661501 CCGAGGGGTGCTTAAGGTGTTCTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 661442
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || |||||||| ||||| |||||| | ||||| || | || || || ||
Sbjct 661441 ACACGCCAAGCGTAAGACGGTCACTGTCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 661382
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | ||||||| |||||
Sbjct 661381 ACGCACCCTTTATGGCTTTGG 661361
Score = 114 bits (126), Expect = 2e-21
Identities = 171/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || || | | || || || |||||||| || ||||||||||| || ||
Sbjct 466369 CGCCAAGCGCCACCGGAAAGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 466310
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || || || ||| |||| || | |||| || ||||
Sbjct 466309 CCGGCGCCTGGCCCGACGCGGCGGCGTGAAACGTATCTCCGGCCTCATCTACGAGGAGAC 466250
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || | ||| || ||
Sbjct 466249 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 466190
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | || || || | || || || ||
Sbjct 466189 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 466130
Query 16672 CCG 16674
|||
Sbjct 466129 CCG 466127
>seq153
Length=4070394
Score = 136 bits (150), Expect = 6e-28
Identities = 178/244 (73%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | |||| |||| ||||||||||| ||||||||||| || |
Sbjct 3912377 CGCCAAGCGCCACCGCA-AGGTCTTGAGAGACAACATCCAAGGCATCACCAAGCCGGCGA 3912435
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||||| ||||| ||||| || || ||||| |||| || || |||| || ||||
Sbjct 3912436 TCCGGCGTCTAGCTCGGCGTGGCGGCGTGAAGCGGATCTCCGGGCTGATCTACGAGGAGA 3912495
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | ||||| | | ||| |||| || || || ||| || |
Sbjct 3912496 CCCGCGGCGTGCTGAAGGTGTTCCTGGAAAACGTGATCCGGGACGCCGTCACCTACACGG 3912555
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | || || || | || || || |
Sbjct 3912556 AGCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3912615
Query 16671 GCCG 16674
||||
Sbjct 3912616 GCCG 3912619
>seq225
Length=700218
Score = 118 bits (130), Expect = 2e-22
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 648038 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 648097
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || || ||||| |||| || | |||| || ||||
Sbjct 648098 CCGGCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 648157
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || | ||| || ||
Sbjct 648158 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 648217
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | || || || | || || || ||
Sbjct 648218 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 648277
Query 16672 CCG 16674
|||
Sbjct 648278 CCG 648280
Score = 118 bits (130), Expect = 2e-22
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 678475 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 678534
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || || ||||| |||| || | |||| || ||||
Sbjct 678535 CCGGCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 678594
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || | ||| || ||
Sbjct 678595 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 678654
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | || || || | || || || ||
Sbjct 678655 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 678714
Query 16672 CCG 16674
|||
Sbjct 678715 CCG 678717
Score = 118 bits (130), Expect = 2e-22
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 683280 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 683221
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || || ||||| |||| || | |||| || ||||
Sbjct 683220 CCGGCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 683161
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || | ||| || ||
Sbjct 683160 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 683101
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | || || || | || || || ||
Sbjct 683100 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 683041
Query 16672 CCG 16674
|||
Sbjct 683040 CCG 683038
>seq66
Length=12910020
Score = 118 bits (130), Expect = 2e-22
Identities = 166/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| ||||||||||| || || ||||| || || || || || || || ||||| || |||
Sbjct 7064160 GACAACATCCAAGGCATTACGAAGCCCGCGATTCGCCGCCTCGCCCGACGTGGGGGCGTC 7064101
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| ||||||| | |||| ||||||| || | || | || ||||||| ||
Sbjct 7064100 AAGCGCATCTCTGGTCTCATCTACGAAGAGACCCGCGGCGTCCTCAAAGTCTTCCTGGAG 7064041
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| || || | ||| || |||||||| || || ||||| ||||| ||
Sbjct 7064040 AATGTGATCCGCGACGCAGTGACCTACACGGAGCACGCCAAGCGCAAGACGGTCACGGCC 7063981
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|||||| | || || || ||||||| || ||||| | |||| || || ||
Sbjct 7063980 ATGGATGTGGTGTACGCGCTGAAACGCCAGGGCCGCACCCTTTACGGCTTCGG 7063928
>seq234
Length=554799
Score = 82.4 bits (90), Expect = 1e-11
Identities = 145/210 (69%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495
||||| || |||| || || || |||||||| || ||||||||||| || ||| |
Sbjct 331323 AAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCTGG 331264
Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555
| |||||||| || ||||| || ||||| |||| || || |||| || |||| ||
Sbjct 331263 AGCCTGGCTCGCCGCGGTGGCGTAAAGCGCATCTCCGGCTTCATCTACGAGGAGACCCGC 331204
Query 16556 GATGT-TTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614
| || | ||| | |||| ||| | | |||| || || | ||| | |||||
Sbjct 331203 GGGGTGGCTCAAGGTTCTCCTGGAGAACCTGATCCGGGACGCCGTGACCTACAGGGAGCA 331144
Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGA 16644
||| || | | ||| |||||| |||||||
Sbjct 331143 CGCCAAGGGCACGACGGTCACCGCCATGGA 331114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79072744171398
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