Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq23 183 5e-42 seq153 136 6e-28 seq225 118 2e-22 seq66 118 2e-22 seq234 82.4 1e-11 >seq23 Length=26360658 Score = 183 bits (202), Expect = 5e-42 Identities = 205/274 (75%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | || || ||||| |||||||| || |||||||| ||||| Sbjct 655260 CGCCAAGCGTCATCGTAAAGTGCTACGCGATAATATCCAAGGCATTACCAAGCCGGCTAT 655319 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||| | ||||| ||||| ||||| |||| || ||| | || || |||| Sbjct 655320 CCGACGCCTGGCTAGGCGTGGCGGAGTAAAGCGAATCTCGGGTTTGATTTACGAGGAGAC 655379 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| ||||||| ||| ||| |||| ||||| | ||| ||||| Sbjct 655380 TCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGAGATGCGGTGACCTACACCGA 655439 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| |||||||| | || || || |||| |||||||| Sbjct 655440 GCACGCCAAGCGAAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTGAAGCGTCAAGG 655499 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 || | | ||||| ||||| |||| | |||| Sbjct 655500 TCGCACTCTGTATGGCTTTGGCGGTTAGTGTTCT 655533 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| | ||||| || |||||||| || || || ||||| ||||| Sbjct 592030 CGCTAAGCGCCATCGCAAAGTCCTTCGGGACAACATCCAGGGCATTACAAAGCCGGCTAT 591971 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| || || ||||| |||||||| | ||||| | ||||||| |||| Sbjct 591970 TCGCCGTTTGGCGCGGCGCGGTGGGGTCAAGCGCATTTCTGGTCTTATCTATGAGGAGAC 591911 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | ||| | | | |||||| | |||||| || || || || Sbjct 591910 TCGAGGTGTGCTTAAGGTTTTCTTGGAAAACGTTATTCGAGATGCTGTCACTTACACGGA 591851 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||||||||| |||||||| |||| ||||| | |||||||| || Sbjct 591850 GCACGCGAAACGCAAGACTGTCACTGCCATGGATGTCGTATATGCTCTAAAACGTCAGGG 591791 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | |||||||| || Sbjct 591790 GCGCACTCTGTATGGTTTCGG 591770 Score = 149 bits (164), Expect = 1e-31 Identities = 182/246 (74%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | || || |||||||||||||| || || ||||||||||| | Sbjct 499918 CGCAAAGCGTCACCGAAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCAGCCA 499860 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| || || || |||||||| | ||||| | ||||||| |||| Sbjct 499859 TCCGGCGCCTTGCTCGCCGCGGCGGCGTCAAGCGCATTTCTGGCCTCATCTATGAGGAGA 499800 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | || || ||| ||| |||| ||||||| || || || | Sbjct 499799 CCCGCGGGGTTCTGAAGGTGTTTCTGGAGAACGTGATCCGTGATGCTGTCACTTACACGG 499740 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || ||| | ||||| | ||||| || | || || || | Sbjct 499739 AGCACGCCAAGCGCAAGACCGTGACCGCGATGGACGTGGTCTACGCGCTCAAGCGGCAGG 499680 Query 16671 GCCGTA 16676 | |||| Sbjct 499679 GACGTA 499674 Score = 145 bits (160), Expect = 1e-30 Identities = 191/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | | || || || |||||||| |||||||||||||| || | Sbjct 515937 CGCCAAGCGCCATCGCA-AGGTATTGCGTGACAACATCCAGGGAATCACCAAGCCCGCCA 515995 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||||| || ||||| ||||||||| | ||||| | | || || |||| Sbjct 515996 TCCGGCGCTTGGCTCGCCGCGGTGGCGTCAAGCGTATTTCTGGCCTCATTTACGAGGAGA 516055 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | ||||| | | ||||||| |||||| || ||| || | Sbjct 516056 CTCGCGGAGTGCTGAAGGTTTTCCTGGAAAATGTTATCCGCGATGCTGTCACCTACACGG 516115 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||| ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 516116 AACACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 516175 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 516176 GACGCACTCTGTATGGCTTCGG 516197 Score = 116 bits (128), Expect = 6e-22 Identities = 184/261 (70%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 661616 GCCAAGCGCCACCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 661558 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || | |||||||| | ||||| || |||| || |||| Sbjct 661557 CCGGCGCCTTGCCCGCCG----GATGTCAAGCGGATATCTGGTCTGATCTACGAGGAGAC 661502 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||| | ||| ||| |||| ||| ||| || |||||| || Sbjct 661501 CCGAGGGGTGCTTAAGGTGTTCTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 661442 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || |||||||| ||||| |||||| | ||||| || | || || || || Sbjct 661441 ACACGCCAAGCGTAAGACGGTCACTGTCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 661382 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 661381 ACGCACCCTTTATGGCTTTGG 661361 Score = 114 bits (126), Expect = 2e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || || |||||||| || ||||||||||| || || Sbjct 466369 CGCCAAGCGCCACCGGAAAGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 466310 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || || ||| |||| || | |||| || |||| Sbjct 466309 CCGGCGCCTGGCCCGACGCGGCGGCGTGAAACGTATCTCCGGCCTCATCTACGAGGAGAC 466250 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || | ||| || || Sbjct 466249 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 466190 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | || || || || Sbjct 466189 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 466130 Query 16672 CCG 16674 ||| Sbjct 466129 CCG 466127 >seq153 Length=4070394 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | |||| |||| ||||||||||| ||||||||||| || | Sbjct 3912377 CGCCAAGCGCCACCGCA-AGGTCTTGAGAGACAACATCCAAGGCATCACCAAGCCGGCGA 3912435 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| ||||| || || ||||| |||| || || |||| || |||| Sbjct 3912436 TCCGGCGTCTAGCTCGGCGTGGCGGCGTGAAGCGGATCTCCGGGCTGATCTACGAGGAGA 3912495 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| | | ||| |||| || || || ||| || | Sbjct 3912496 CCCGCGGCGTGCTGAAGGTGTTCCTGGAAAACGTGATCCGGGACGCCGTCACCTACACGG 3912555 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 3912556 AGCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3912615 Query 16671 GCCG 16674 |||| Sbjct 3912616 GCCG 3912619 >seq225 Length=700218 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 648038 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 648097 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 648098 CCGGCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 648157 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || | ||| || || Sbjct 648158 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 648217 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | || || || || Sbjct 648218 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 648277 Query 16672 CCG 16674 ||| Sbjct 648278 CCG 648280 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 678475 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 678534 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 678535 CCGGCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 678594 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || | ||| || || Sbjct 678595 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 678654 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | || || || || Sbjct 678655 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 678714 Query 16672 CCG 16674 ||| Sbjct 678715 CCG 678717 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 683280 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 683221 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 683220 CCGGCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 683161 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || | ||| || || Sbjct 683160 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 683101 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | || || || || Sbjct 683100 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 683041 Query 16672 CCG 16674 ||| Sbjct 683040 CCG 683038 >seq66 Length=12910020 Score = 118 bits (130), Expect = 2e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| || || ||||| || || || || || || || ||||| || ||| Sbjct 7064160 GACAACATCCAAGGCATTACGAAGCCCGCGATTCGCCGCCTCGCCCGACGTGGGGGCGTC 7064101 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| ||||||| | |||| ||||||| || | || | || ||||||| || Sbjct 7064100 AAGCGCATCTCTGGTCTCATCTACGAAGAGACCCGCGGCGTCCTCAAAGTCTTCCTGGAG 7064041 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || || | ||| || |||||||| || || ||||| ||||| || Sbjct 7064040 AATGTGATCCGCGACGCAGTGACCTACACGGAGCACGCCAAGCGCAAGACGGTCACGGCC 7063981 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| | || || || ||||||| || ||||| | |||| || || || Sbjct 7063980 ATGGATGTGGTGTACGCGCTGAAACGCCAGGGCCGCACCCTTTACGGCTTCGG 7063928 >seq234 Length=554799 Score = 82.4 bits (90), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 ||||| || |||| || || || |||||||| || ||||||||||| || ||| | Sbjct 331323 AAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCTGG 331264 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 | |||||||| || ||||| || ||||| |||| || || |||| || |||| || Sbjct 331263 AGCCTGGCTCGCCGCGGTGGCGTAAAGCGCATCTCCGGCTTCATCTACGAGGAGACCCGC 331204 Query 16556 GATGT-TTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 | || | ||| | |||| ||| | | |||| || || | ||| | ||||| Sbjct 331203 GGGGTGGCTCAAGGTTCTCCTGGAGAACCTGATCCGGGACGCCGTGACCTACAGGGAGCA 331144 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||| || | | ||| |||||| ||||||| Sbjct 331143 CGCCAAGGGCACGACGGTCACCGCCATGGA 331114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072744171398