Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq37 219 4e-52
seq22 93.3 4e-14
seq88 87.8 2e-12
seq132 86.0 7e-12
seq111 82.4 8e-11
seq19 82.4 8e-11
>seq37
Length=19344684
Score = 219 bits (242), Expect = 4e-52
Identities = 523/791 (66%), Gaps = 14/791 (2%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||| | || | ||| ||| ||| | ||||||| | ||||
Sbjct 211253 TTGATTTAGAAGTCAGCACCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 211312
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| | || ||||| || || || || || || |||||||||| ||| |||
Sbjct 211313 ATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCTTCCAGTGAAATA 211372
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
|||||||| ||||||||||| || | | || | | || |||||||||| |
Sbjct 211373 TTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTAAAACCCAGTTCC-AG 211431
Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360
|||| ||| ||||| ||||| || || ||||| ||||| |||||||| || ||
Sbjct 211432 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 211491
Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420
| || ||||| | || | || | || | ||| || || || | |||
Sbjct 211492 GAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCACTGATAAT 211551
Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474
||| | | ||| |||| |||| | | ||| | ||||| |||||||
Sbjct 211552 TATTTCTCTTACTCTCTCCTCTGATGGTTTGTG----TAC--TTGGTGTTTGAACATCAG 211605
Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534
|| || |||||||| || ||||| ||||| || | | | ||||||||||||||| |
Sbjct 211606 GCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTGAG 211665
Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594
|| ||||| | ||||| || || | ||| ||||| || ||||| | || ||||||||
Sbjct 211666 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAA 211725
Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654
||||| || || |||||||| || | | ||||||| || |||| ||||| |||
Sbjct 211726 GATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTTGTCCCC 211785
Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714
| ||| ||||| | |||||| | || | |||| || || |||||||| ||
Sbjct 211786 AACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCATT 211845
Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774
|| ||| | |||| | ||| ||||| |||||| ||
Sbjct 211846 GAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATATAT 211905
Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834
|||||||||||| |||| || || || || || || || ||||| || ||||
Sbjct 211906 TTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTCTGTGAT 211965
Query 21835 TTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894
||||| || |||||| | ||||||||||||||||||| |||| ||| || ||
Sbjct 211966 CTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACTTGCTGC 212025
Query 21895 AAAAAATGCCA 21905
||| || ||||
Sbjct 212026 AAAGAAAGCCA 212036
>seq22
Length=27210278
Score = 93.3 bits (102), Expect = 4e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | ||||||| | ||||
Sbjct 23195303 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 23195362
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||||||||||| ||| |||
Sbjct 23195363 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 23195422
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||||| ||||||||||| ||
Sbjct 23195423 TTCTCCATAAAGTCAAATGGATTCTC 23195448
>seq88
Length=9397244
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/199 (71%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 145456 GAATATAAAAGAGACCCTAAAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGA 145514
||||| ||| |||||| |||| ||| ||| |||| || || ||||| || ||||||||
Sbjct 4816371 GAATACAAAGAAGACCCCAAAAT-ATGTCATGATGGCACTATTGAATTCACGAGCATCGA 4816429
Query 145515 TATGCATCGTGGAGCATGCCCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTAT 145574
| || ||| | ||| || || || || |||||||||||| | |||||||| ||
Sbjct 4816430 TGCACACAATGGCGTGGCCCCATCAAGACGTGGTGATTTAGAAATACTTGGTTATTGCAT 4816489
Query 145575 GATTACTTGGTTAGGTGGTAAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG- 145633
||| ||| | ||| | | || |||||||||||||| ||| || || ||||
Sbjct 4816490 GATCCAATGGCTTACTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAGATATGT 4816549
Query 145634 TAATGAATTCAAAAGTAGA 145652
|| || | ||||| ||||
Sbjct 4816550 TAGAGATTCCAAAATTAGA 4816568
>seq132
Length=5918258
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| || || ||| ||| || ||||| | | |
Sbjct 989979 TTTAAAAATCTGCATCCAAGGTGAAGACGTTGTCTGTGGTTTCTGCCATAACTGCAAAGC 989920
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| ||| || || |||||||| |||||||| | || || ||
Sbjct 989919 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATGTTTT 989860
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 989859 CCATAAAATCAAAAGGATTTTC 989838
>seq111
Length=7367144
Score = 82.4 bits (90), Expect = 8e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182
||||||| || || ||||| || | ||| ||||||| ||| ||| ||| | | |||
Sbjct 4918977 TTATTTAGAAGTCGGCATCCAAAGTAAAAGAATTATCTATTTTACTTGGCATCACTGCCA 4918918
Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242
| |||||||| |||| ||||| || || || || || |||||||||||| ||| |||
Sbjct 4918917 TCTTTTGATACTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTGAAATAT 4918858
Query 21243 ATTCCATAAAATC 21255
||||| || ||
Sbjct 4918857 TCTCCATGAAGTC 4918845
>seq19
Length=29834108
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775
|||||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||||
Sbjct 28702302 AATGTCCAATTTCTTGTGTCTTCAGAAAAATAAAAACATTTACTCCCAAATCCAATCCAG 28702361
Query 130776 CCCTTTGGGCAAG 130788
| ||||||||||
Sbjct 28702362 CTTTTTGGGCAAG 28702374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531882941430640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |