Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq37 219 4e-52 seq22 93.3 4e-14 seq88 87.8 2e-12 seq132 86.0 7e-12 seq111 82.4 8e-11 seq19 82.4 8e-11 >seq37 Length=19344684 Score = 219 bits (242), Expect = 4e-52 Identities = 523/791 (66%), Gaps = 14/791 (2%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||| | || | ||| ||| ||| | ||||||| | |||| Sbjct 211253 TTGATTTAGAAGTCAGCACCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 211312 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| | || ||||| || || || || || || |||||||||| ||| ||| Sbjct 211313 ATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCTTCCAGTGAAATA 211372 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| ||||||||||| || | | || | | || |||||||||| | Sbjct 211373 TTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTAAAACCCAGTTCC-AG 211431 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 211432 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 211491 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | || | ||| || || || | ||| Sbjct 211492 GAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCACTGATAAT 211551 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 ||| | | ||| |||| |||| | | ||| | ||||| ||||||| Sbjct 211552 TATTTCTCTTACTCTCTCCTCTGATGGTTTGTG----TAC--TTGGTGTTTGAACATCAG 211605 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || || |||||||| || ||||| ||||| || | | | ||||||||||||||| | Sbjct 211606 GCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTGAG 211665 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| | ||||| || || | ||| ||||| || ||||| | || |||||||| Sbjct 211666 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAA 211725 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 ||||| || || |||||||| || | | ||||||| || |||| ||||| ||| Sbjct 211726 GATGCCTTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTTGTCCCC 211785 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 | ||| ||||| | |||||| | || | |||| || || |||||||| || Sbjct 211786 AACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCATT 211845 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || ||| | |||| | ||| ||||| |||||| || Sbjct 211846 GAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATATAT 211905 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||||||||||| |||| || || || || || || || ||||| || |||| Sbjct 211906 TTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTCTGTGAT 211965 Query 21835 TTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 ||||| || |||||| | ||||||||||||||||||| |||| ||| || || Sbjct 211966 CTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACTTGCTGC 212025 Query 21895 AAAAAATGCCA 21905 ||| || |||| Sbjct 212026 AAAGAAAGCCA 212036 >seq22 Length=27210278 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 23195303 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 23195362 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 23195363 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 23195422 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| ||||||||||| || Sbjct 23195423 TTCTCCATAAAGTCAAATGGATTCTC 23195448 >seq88 Length=9397244 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 145456 GAATATAAAAGAGACCCTAAAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGA 145514 ||||| ||| |||||| |||| ||| ||| |||| || || ||||| || |||||||| Sbjct 4816371 GAATACAAAGAAGACCCCAAAAT-ATGTCATGATGGCACTATTGAATTCACGAGCATCGA 4816429 Query 145515 TATGCATCGTGGAGCATGCCCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTAT 145574 | || ||| | ||| || || || || |||||||||||| | |||||||| || Sbjct 4816430 TGCACACAATGGCGTGGCCCCATCAAGACGTGGTGATTTAGAAATACTTGGTTATTGCAT 4816489 Query 145575 GATTACTTGGTTAGGTGGTAAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG- 145633 ||| ||| | ||| | | || |||||||||||||| ||| || || |||| Sbjct 4816490 GATCCAATGGCTTACTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAGATATGT 4816549 Query 145634 TAATGAATTCAAAAGTAGA 145652 || || | ||||| |||| Sbjct 4816550 TAGAGATTCCAAAATTAGA 4816568 >seq132 Length=5918258 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| || || ||| ||| || ||||| | | | Sbjct 989979 TTTAAAAATCTGCATCCAAGGTGAAGACGTTGTCTGTGGTTTCTGCCATAACTGCAAAGC 989920 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| |||||||| | || || || Sbjct 989919 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATGTTTT 989860 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 989859 CCATAAAATCAAAAGGATTTTC 989838 >seq111 Length=7367144 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 ||||||| || || ||||| || | ||| ||||||| ||| ||| ||| | | ||| Sbjct 4918977 TTATTTAGAAGTCGGCATCCAAAGTAAAAGAATTATCTATTTTACTTGGCATCACTGCCA 4918918 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 | |||||||| |||| ||||| || || || || || |||||||||||| ||| ||| Sbjct 4918917 TCTTTTGATACTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTGAAATAT 4918858 Query 21243 ATTCCATAAAATC 21255 ||||| || || Sbjct 4918857 TCTCCATGAAGTC 4918845 >seq19 Length=29834108 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 |||||||||||| ||| ||||||||||| ||||| |||||| |||||||||||||| Sbjct 28702302 AATGTCCAATTTCTTGTGTCTTCAGAAAAATAAAAACATTTACTCCCAAATCCAATCCAG 28702361 Query 130776 CCCTTTGGGCAAG 130788 | |||||||||| Sbjct 28702362 CTTTTTGGGCAAG 28702374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531882941430640