Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq54 105 6e-18 seq134 104 2e-17 seq38 102 7e-17 seq116 98.7 8e-16 seq8 96.9 3e-15 seq101 91.5 1e-13 seq52 91.5 1e-13 seq14 87.8 2e-12 >seq54 Length=16265076 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 115284 AAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCA 115343 ||| ||| |||||||| ||||| || || || || ||||| ||| |||| | || || Sbjct 5607227 AAAAGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGCTGAACCCT 5607168 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || ||| | | | ||||| || ||| ||||| |||||| | || ||||| Sbjct 5607167 CGGATACTACAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATC 5607108 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||||||||| || | ||| ||||| ||| | ||||||| | || | || || | Sbjct 5607107 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTATTTTGTCTGACTACA 5607048 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||| || ||||||||| | ||| | ||||||||| Sbjct 5607047 ACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 5607010 >seq134 Length=5851302 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 3733157 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 3733216 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 3733217 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3733276 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 3733277 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 3733336 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||||||| | ||| | ||||||||| | || || || Sbjct 3733337 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 3733386 >seq38 Length=19171412 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 14820745 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 14820686 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 14820685 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 14820626 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 14820625 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 14820566 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 |||||||| || ||||||||| | ||| | ||||||||| Sbjct 14820565 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 14820527 >seq116 Length=6990774 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| ||||| || | ||| || ||||| ||| || | | || | Sbjct 541502 AAAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCAAGGCTGAACCT 541561 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 541562 TCGGATACAATAGAAAACGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 541621 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 541622 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 541681 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||||||| ||||||| | | ||| | ||||||||| Sbjct 541682 AACATTCAAAAGGAGTCTATTTTTCATCTTGTGTTGAGA 541720 >seq8 Length=45331107 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || ||||||||||||| | || ||||| ||||| ||| ||||| Sbjct 31945533 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGATTGATCTATGCTGGCAAGCAACTAGAA 31945592 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || || | || || ||||||||||| ||||||||| | ||| |||||||| Sbjct 31945593 GATGGACGTACTCTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTGGTGTTG 31945652 Query 115499 AGA 115501 ||| Sbjct 31945653 AGA 31945655 >seq101 Length=8127303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||||||||| | || ||||||||||||||| || | ||| ||||| ||| | ||| Sbjct 4242013 GATAAAGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 4241954 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| || || | || |||||||||||||| ||||||||| | ||| | |||||| Sbjct 4241953 GATTGTTGTACTTTGTCTGACTATAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTG 4241894 Query 115499 AGA 115501 ||| Sbjct 4241893 AGA 4241891 >seq52 Length=16356641 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 10618873 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 10618932 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || ||| Sbjct 10618933 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAG 10618992 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 10618993 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 10619052 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 |||||||| || ||||||||| | ||| | ||||| Sbjct 10619053 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 10619087 >seq14 Length=37227512 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| ||||| |||| ||| || | ||| ||| | || || || Sbjct 27608000 AAAATGCAGATTTTTGTGAAAACCCTCATGGGGAAGATCATCACCCTTGAGGTTGAACCC 27607941 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | ||||| || || ||||| ||||| | || |||| Sbjct 27607940 TCCGACACGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 27607881 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGAT-GACAAAACCATGGCCGATTA 115461 ||| ||||||| || | ||| ||||| ||| | |||||| |||| | | | | | || Sbjct 27607880 CAGGAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGACATA--CTTTGAC---TA 27607826 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||||||| ||||||| | | ||| | |||| |||| Sbjct 27607825 CAACATTCAAAAGGAGTCTAGTCTTCATCTTGTGTCGAGA 27607786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425330076098320