Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 seq33 91.5 1e-13 seq11 91.5 1e-13 seq134 89.7 5e-13 seq27 89.7 5e-13 seq59 87.8 2e-12 seq38 87.8 2e-12 seq52 86.0 6e-12 seq71 84.2 2e-11 seq85 82.4 7e-11 seq8 82.4 7e-11 >seq9 Length=44311105 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||| |||| |||||||| | || | ||| ||||| || || |||||||| || | Sbjct 19097354 GCCACTTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTC--T 19097297 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| ||||| |||| || | || | |||||||||||| || || Sbjct 19097296 GAGCGTGAGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGG 19097237 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| ||| || |||| | ||| | || || ||| ||||| Sbjct 19097236 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 19097178 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 19097177 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||||| || | ||| ||||| || ||||||||||| || Sbjct 3708447 GCCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 3708388 Query 131067 CATGGTG-CGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||| ||| | ||||| ||||| || || || | || | || ||||||||| || | Sbjct 3708387 GAGTGTGCCGCCA-TCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTG 3708329 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 |||| || || ||||| ||| ||| || |||| | ||| ||||| ||| |||| Sbjct 3708328 GGATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCG 3708270 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | ||| | ||| | || || || || || || || ||||| || Sbjct 3708269 ACCTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| || || | ||||| ||||| ||||||||||||||||| || ||||| | Sbjct 1894393 TGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 1894452 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || |||| || || | ||| || |||||||| ||||| Sbjct 1894453 TGCTCTTCCGATTACAGGAGTCTTTATAGAGCATATACGG 1894492 >seq33 Length=21137282 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/241 (68%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || |||||| || | || | ||||||||| || || |||||||| || Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || |||||||||||||| |||| | | ||||||||| |||||| Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | || | || || ||| ||| | Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA---TGACTTATTTT 131244 || | || | ||| || ||||| || || || ||||| ||||||| |||| || ||| Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGACCTAGTTT 15373517 Query 131245 A 131245 | Sbjct 15373516 A 15373516 >seq11 Length=43820709 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||| | || | ||| ||||| || || ||||||| || Sbjct 25320730 GCCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGA 25320789 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||| ||||| || | || | |||||||||||| || || Sbjct 25320790 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 25320849 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || | ||||| ||| ||| || |||| | ||| | || || ||| ||||| Sbjct 25320850 GATACCCTTCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 25320908 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 25320909 CCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957 >seq134 Length=5851302 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | || |||||||| ||||||||||| || | Sbjct 3733386 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3733327 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || |||||||| || |||| | | ||||| || ||||| Sbjct 3733326 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3733267 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||||| | || || | Sbjct 3733266 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 3733207 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || ||||| |||||||||||||| Sbjct 3733206 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3733160 >seq27 Length=24139186 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131016 CAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCG 131075 ||| | ||| || | || | ||| ||||| || || || ||||| || | |||||| Sbjct 5858138 CAAGCACAGGACCACGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCG 5858079 Query 131076 CGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTC 131135 | ||| || ||||| || || || |||| | | |||||| || |||||||| ||||| Sbjct 5858078 CCCGTCTTCCAGCTGTTTCCCAGCAAAGATCGATCTCTGCTGCTCAGGAGGGATGCCTTC 5858019 Query 131136 TTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 |||||| ||| || ||||| | || | | | || ||| || || |||| ||| Sbjct 5858018 TTTGTCCTGGATCTTTGCCTTGATGTTTTCAATAATGTCACTGGGCTGGACCTCGAGGGT 5857959 Query 131196 AACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGC 131232 | ||| || || || ||||| || | ||| |||||| Sbjct 5857958 GATGGTCTTGCCAGTCAGAGTCTTCATGAAGATCTGC 5857922 >seq59 Length=14671897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || | | || | ||| |||||||| ||||||||||| || Sbjct 11745124 CCACCTCGGAGACGGAGGATGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAT 11745065 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | ||||| || || ||||| || | || |||| || | ||| ||||| |||||| Sbjct 11745064 AGGTTGCGCCCATCTTCCAGCTGTTTCCTGGCAAAGATCAATCTCTGTTGGTCAGGAGGG 11745005 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || ||| ||||| Sbjct 11745004 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACC 11744945 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 || | ||| | ||| |||| ||| ||||| || | || |||| Sbjct 11744944 TCAAGGGTGATGGTCTTACTGGTCAGAGTCTTCAGAAAGATCT 11744902 >seq38 Length=19171412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||| | ||| | || |||||||| ||||||||||| || || || || || Sbjct 14820530 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 14820589 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || || |||||||| || |||| | | ||||| || ||||| |||||||| || || Sbjct 14820590 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 14820649 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || ||| | | || | ||||| | || || | |||| ||| | ||| Sbjct 14820650 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 14820709 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| |||||||||||||| Sbjct 14820710 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 14820742 >seq52 Length=16356641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131025 CACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTC 131084 ||| | ||| | || |||||||| ||||||||||| || || || || || || Sbjct 10619085 CACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTC 10619026 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || |||||||| || |||| | | ||||| || ||||| |||||||| || || Sbjct 10619025 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCCTG 10618966 Query 131145 GATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 ||| || ||| | | || | ||||| | || || | |||| ||| | ||| || Sbjct 10618965 GATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTT 10618906 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || ||||| |||||||||||||| Sbjct 10618905 CCCCGTAAGGGTTTTCACGAAAATCTGCAT 10618876 >seq71 Length=11673789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||| || | | | ||| ||||| || || |||||||| || Sbjct 72301 AGCCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAG 72242 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || |||||||||||||| |||| | | ||||||||| | | Sbjct 72241 GAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGG 72182 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||| || || ||| || ||||| | || | || || | | ||| | Sbjct 72181 GGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCA 72122 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || || || |||||||| Sbjct 72121 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72073 >seq85 Length=9676098 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||| | ||| | || |||||||||||||||||||| || || || || ||| Sbjct 5982641 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTGTC 5982582 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || || | |||||| || |||| | ||||| || ||||| |||||||| || || Sbjct 5982581 TTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5982522 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || ||| | | || ||||| | || || | |||| ||| | ||| Sbjct 5982521 CTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 5982462 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| |||||||||||||| Sbjct 5982461 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 5982429 >seq8 Length=45331107 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||| | ||| | || |||||||||||||||||||| || || || || || Sbjct 31945652 CAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATC 31945593 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||||| |||||||| || ||||| || | ||||| || ||||| |||||||| || || Sbjct 31945592 TTCTAGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 31945533 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || ||| | | || ||||| | || || | | || ||| | || Sbjct 31945532 CTGGATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAACCTGGAGGGTGATAGT 31945473 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || ||||||| | |||||||||||| Sbjct 31945472 CTTCTCCGTAAGAGTTTGTGTGAAAATCTGCAT 31945440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471996952170240