Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq9 93.3 4e-14
seq33 91.5 1e-13
seq11 91.5 1e-13
seq134 89.7 5e-13
seq27 89.7 5e-13
seq59 87.8 2e-12
seq38 87.8 2e-12
seq52 86.0 6e-12
seq71 84.2 2e-11
seq85 82.4 7e-11
seq8 82.4 7e-11
>seq9
Length=44311105
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||| |||| |||||||| | || | ||| ||||| || || |||||||| || |
Sbjct 19097354 GCCACTTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTC--T 19097297
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||| | ||||| ||||| |||| || | || | |||||||||||| || ||
Sbjct 19097296 GAGCGTGAGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGG 19097237
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
||| || || ||||| ||| ||| || |||| | ||| | || || ||| |||||
Sbjct 19097236 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 19097178
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || || || || || || ||||||||
Sbjct 19097177 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129
Score = 89.7 bits (98), Expect = 5e-13
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| | || |||||||||| || | ||| ||||| || ||||||||||| ||
Sbjct 3708447 GCCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 3708388
Query 131067 CATGGTG-CGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||| ||| | ||||| ||||| || || || | || | || ||||||||| || |
Sbjct 3708387 GAGTGTGCCGCCA-TCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTG 3708329
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCG 131184
|||| || || ||||| ||| ||| || |||| | ||| ||||| ||| ||||
Sbjct 3708328 GGATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCG 3708270
Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
| || | ||| | ||| | || || || || || || || ||||| ||
Sbjct 3708269 ACCTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220
Score = 82.4 bits (90), Expect = 7e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||| | ||| || || | ||||| ||||| ||||||||||||||||| || ||||| |
Sbjct 1894393 TGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 1894452
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767
| || |||| || || | ||| || |||||||| |||||
Sbjct 1894453 TGCTCTTCCGATTACAGGAGTCTTTATAGAGCATATACGG 1894492
>seq33
Length=21137282
Score = 91.5 bits (100), Expect = 1e-13
Identities = 165/241 (68%), Gaps = 3/241 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || | || |||||| || | || | ||||||||| || || |||||||| ||
Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| | || || |||||||||||||| |||| | | ||||||||| ||||||
Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| || || ||| || ||| | | || | || || ||| ||| |
Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA---TGACTTATTTT 131244
|| | || | ||| || ||||| || || || ||||| ||||||| |||| || |||
Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGACCTAGTTT 15373517
Query 131245 A 131245
|
Sbjct 15373516 A 15373516
>seq11
Length=43820709
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| |||| ||||||| | || | ||| ||||| || || ||||||| ||
Sbjct 25320730 GCCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGA 25320789
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| ||||| ||||| ||||| || | || | |||||||||||| || ||
Sbjct 25320790 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 25320849
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
||| || | ||||| ||| ||| || |||| | ||| | || || ||| |||||
Sbjct 25320850 GATACCCTTCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 25320908
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || || || || || || ||||||||
Sbjct 25320909 CCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957
>seq134
Length=5851302
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | | || ||| | ||| | || |||||||| ||||||||||| || |
Sbjct 3733386 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3733327
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || || || || |||||||| || |||| | | ||||| || |||||
Sbjct 3733326 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3733267
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|||||||| || || ||| || ||| | | || | ||||| | || || |
Sbjct 3733266 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 3733207
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || || || || ||||| ||||||||||||||
Sbjct 3733206 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3733160
>seq27
Length=24139186
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131016 CAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCG 131075
||| | ||| || | || | ||| ||||| || || || ||||| || | ||||||
Sbjct 5858138 CAAGCACAGGACCACGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCG 5858079
Query 131076 CGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTC 131135
| ||| || ||||| || || || |||| | | |||||| || |||||||| |||||
Sbjct 5858078 CCCGTCTTCCAGCTGTTTCCCAGCAAAGATCGATCTCTGCTGCTCAGGAGGGATGCCTTC 5858019
Query 131136 TTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195
|||||| ||| || ||||| | || | | | || ||| || || |||| |||
Sbjct 5858018 TTTGTCCTGGATCTTTGCCTTGATGTTTTCAATAATGTCACTGGGCTGGACCTCGAGGGT 5857959
Query 131196 AACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGC 131232
| ||| || || || ||||| || | ||| ||||||
Sbjct 5857958 GATGGTCTTGCCAGTCAGAGTCTTCATGAAGATCTGC 5857922
>seq59
Length=14671897
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || | | || | ||| |||||||| ||||||||||| ||
Sbjct 11745124 CCACCTCGGAGACGGAGGATGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAT 11745065
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| | ||||| || || ||||| || | || |||| || | ||| ||||| ||||||
Sbjct 11745064 AGGTTGCGCCCATCTTCCAGCTGTTTCCTGGCAAAGATCAATCTCTGTTGGTCAGGAGGG 11745005
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || ||||| | || | || || ||| |||||
Sbjct 11745004 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACC 11744945
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230
|| | ||| | ||| |||| ||| ||||| || | || ||||
Sbjct 11744944 TCAAGGGTGATGGTCTTACTGGTCAGAGTCTTCAGAAAGATCT 11744902
>seq38
Length=19171412
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081
|| ||| | ||| | || |||||||| ||||||||||| || || || || ||
Sbjct 14820530 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 14820589
Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141
|| || |||||||| || |||| | | ||||| || ||||| |||||||| || ||
Sbjct 14820590 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 14820649
Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201
||| || ||| | | || | ||||| | || || | |||| ||| | |||
Sbjct 14820650 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 14820709
Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || || || ||||| ||||||||||||||
Sbjct 14820710 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 14820742
>seq52
Length=16356641
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131025 CACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTC 131084
||| | ||| | || |||||||| ||||||||||| || || || || || ||
Sbjct 10619085 CACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTC 10619026
Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144
|| |||||||| || |||| | | ||||| || ||||| |||||||| || ||
Sbjct 10619025 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCCTG 10618966
Query 131145 GATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204
||| || ||| | | || | ||||| | || || | |||| ||| | ||| ||
Sbjct 10618965 GATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTT 10618906
Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || || ||||| ||||||||||||||
Sbjct 10618905 CCCCGTAAGGGTTTTCACGAAAATCTGCAT 10618876
>seq71
Length=11673789
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | || |||||| || | | | ||| ||||| || || |||||||| ||
Sbjct 72301 AGCCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAG 72242
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||||| || || |||||||||||||| |||| | | ||||||||| | |
Sbjct 72241 GAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGG 72182
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
|||| ||||| || || ||| || ||||| | || | || || | | ||| |
Sbjct 72181 GGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCA 72122
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || ||||| || || || || || ||||||||
Sbjct 72121 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72073
>seq85
Length=9676098
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081
|| ||| | ||| | || |||||||||||||||||||| || || || || |||
Sbjct 5982641 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTGTC 5982582
Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141
|| || | |||||| || |||| | ||||| || ||||| |||||||| || ||
Sbjct 5982581 TTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5982522
Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201
||| || ||| | | || ||||| | || || | |||| ||| | |||
Sbjct 5982521 CTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 5982462
Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || || || ||||| ||||||||||||||
Sbjct 5982461 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 5982429
>seq8
Length=45331107
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081
|| ||| | ||| | || |||||||||||||||||||| || || || || ||
Sbjct 31945652 CAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATC 31945593
Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141
||||| |||||||| || ||||| || | ||||| || ||||| |||||||| || ||
Sbjct 31945592 TTCTAGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 31945533
Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201
||| || ||| | | || ||||| | || || | | || ||| | ||
Sbjct 31945532 CTGGATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAACCTGGAGGGTGATAGT 31945473
Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || ||||||| | ||||||||||||
Sbjct 31945472 CTTCTCCGTAAGAGTTTGTGTGAAAATCTGCAT 31945440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471996952170240
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