Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq33 104 2e-17 seq9 95.1 1e-14 seq71 87.8 1e-12 >seq33 Length=21137282 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || ||||| || || ||||||||||| | Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || |||||| | | | ||||| | ||||||| Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 15373579 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| |||||||| || |||||||| || || || || |||||||||||| Sbjct 15373578 CCTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 15373526 >seq9 Length=44311105 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 14505871 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG-- 14505814 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| |||||||| ||| | || || | ||| ||||| | || Sbjct 14505813 AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGGG 14505754 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||||| ||| || || | | ||||| | |||||| Sbjct 14505753 ATACCTTCCTTGTCTTGAATTTTGGCT--TTGACATTCTCAGTGGTGTCACTGGGCTCGA 14505696 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || || ||||| |||||||| Sbjct 14505695 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647 >seq71 Length=11673789 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| | ||| || ||||| || || ||||||||||| | | || | | || Sbjct 72285 CAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAGGAAGAGTGCGGCCATC 72226 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| || || || Sbjct 72225 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGGGGATGCCTTCCTTATC 72166 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| |||| ||||||| Sbjct 72165 CTGGATCTTGGC--CTTGACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATG 72108 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || |||||||| || || ||||| |||||||||||| Sbjct 72107 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 72069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405074739191140