Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq49 127 1e-24 seq134 114 9e-21 seq38 114 9e-21 seq61 113 3e-20 seq114 104 2e-17 seq52 104 2e-17 seq5 100 2e-16 seq180 98.7 7e-16 seq85 96.9 2e-15 seq218 95.1 8e-15 seq19 95.1 8e-15 seq101 91.5 1e-13 seq10 89.7 3e-13 seq102 87.8 1e-12 seq22 86.0 4e-12 seq116 84.2 1e-11 seq39 84.2 1e-11 >seq49 Length=16587080 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 1581925 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 1581866 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1581865 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1581831 >seq134 Length=5851302 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||| ||||| ||||| ||||||||| |||| | || Sbjct 3733372 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 3733313 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 3733312 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 3733253 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| |||||| || | || || || Sbjct 3733252 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 3733193 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 3733192 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 3733157 >seq38 Length=19171412 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||| ||||| ||||| ||||||||| |||| | || Sbjct 14820530 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 14820589 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 14820590 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 14820649 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| |||||| || | || || || Sbjct 14820650 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 14820709 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 14820710 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 14820745 >seq61 Length=14256875 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || ||||| || Sbjct 4475777 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGATAGTGGGAATCTTGT 4475718 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||| |||||| || Sbjct 4475717 TCATCCATTCATGCGCGTCACTAATGAGATGATGA 4475683 >seq114 Length=7082604 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| |||| || |||||||| ||||| || |||||||| Sbjct 6106239 AAGCCCGTTCCCTTGGCTGTGCTTTCCCTGGATAGTAGGTAGGGACAATGGGAATCTCGT 6106180 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| |||||||||||||||| | ||||||||| Sbjct 6106179 TCATCTATTCATGCGCGTCACTAGTCAGATGACGA 6106145 >seq52 Length=16356641 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 ||||| | ||||||||| |||||| ||||| ||||| ||||||||| |||| | || Sbjct 10619087 AACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 10619028 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || | ||| || || ||||| || || | ||| || || | || | ||||| || ||| Sbjct 10619027 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCC 10618968 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 || || ||| ||||| | | ||||| |||||| || | || || || Sbjct 10618967 TGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTC 10618908 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 10618907 TTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 10618873 >seq5 Length=50794693 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || ||||||| ||||| || |||||| | Sbjct 24737485 AAGCCCATTCCCTTGGCTGTGGTTTCACTGGATAGTAAGTAGGGACAGTGGGAATCTCAT 24737426 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||||| |||||||||||||||| Sbjct 24737425 TCATCCATTCATGCGCATCACTAATTAGATGAC 24737393 >seq180 Length=3031737 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||| Sbjct 120704 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGATACTTGTTGACTATCCGTCTCGT 120763 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 120764 GCTGGTATTTAGCCTTA 120780 >seq85 Length=9676098 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||| ||||| ||||||||| |||| ||| Sbjct 5982641 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTGTC 5982582 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || | | ||| ||||| | || | ||||| || || Sbjct 5982581 TTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5982522 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | ||||| |||||| || | || || || Sbjct 5982521 CTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 5982462 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || | |||||||||||| |||||||| || Sbjct 5982461 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 5982426 >seq218 Length=888862 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||| ||||| ||||| ||||||||| |||| | || Sbjct 160579 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCCTC 160638 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || | | ||| ||||| | || | ||||| || || Sbjct 160639 TTCCAGTTGCTTGCCAGCAAAGAT--GTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 160696 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||| |||||| || | || || || Sbjct 160697 CTGGATCTTGACCTTTACATTTTCTATCCTATCCGAGGGTTCAACCTCAAGGGTGATGGT 160756 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | |||||||||||| |||||||| || Sbjct 160757 CTTCCCCTTAAGGGTTTTCACGAAAATCTGCATTTT 160792 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| || ||| ||||| ||||| ||||||||| || | | || Sbjct 683688 CAACACAAGATGAAGAGTAGACTTCTTCTGAATGTTGTAGTCAGACAAAGTACATCCATC 683747 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 683748 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 683807 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | |||| | | |||| | || || || || || Sbjct 683808 CTGGATCTTGGCCTTTACATTTTC-----TATC-CAGCGTTCAGCCTCGAAGGTGATGGT 683861 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | |||||||||||| |||||||| || Sbjct 683862 CTTCCCCTTAAGGGTTTTCACGAAAATCTGCATTTT 683897 >seq19 Length=29834108 Score = 95.1 bits (104), Expect = 8e-15 Identities = 76/92 (83%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| |||||||| ||||| || |||||| | Sbjct 12795292 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCTT 12795351 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | |||| ||||||| ||||||| |||||||| Sbjct 12795352 TCATCCATTCATGCATGTCACTACTTAGATGA 12795383 >seq101 Length=8127303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||| || || ||||||||| || || Sbjct 4241894 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTATAGTCAGACAAAGTACAACAATC 4241953 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | |||||||| || Sbjct 4241954 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 4242013 Query 38225 CATAATTTTTTGCTTCACATTCT-GGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 | || || ||| ||||| | | || ||||| |||| | || | || |||| Sbjct 4242014 CTGGATCTTGGCCTTTACATTTTCTGTCA-TATCTGAGAGTTCATCCTCGAGGGTGATAG 4242072 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || ||| | | |||||||| ||| |||||||| || Sbjct 4242073 TCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 4242109 >seq10 Length=44255708 Score = 89.7 bits (98), Expect = 3e-13 Identities = 75/92 (82%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||| ||||||| |||||| ||| |||||||| ||||| || |||||| | Sbjct 30146789 AAGCCTGTTCTCTTGGCTATGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 30146730 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | |||| |||||||| ||||||||||| |||| Sbjct 30146729 TCATCCATTCATGCGTGTCACTAATTACATGA 30146698 >seq102 Length=8035806 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||||| ||||| || |||||||||||| ||||| ||| || |||| | || Sbjct 179592 CAACACCAGGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCA----AAGTACGTCCATC 179537 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | | ||| || || Sbjct 179536 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTATC 179477 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 ||| | ||| ||||| | | ||||| ||||||||| | || || || Sbjct 179476 ATGGATTGTGGCCTTTACATTTTCTATCTTATCTGAGGGTTCAACTTCGAGGGTGATGGT 179417 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 179416 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 179381 >seq22 Length=27210278 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||| Sbjct 23209351 CTCTCTCTTCAAAGTTCTTCTCAGCTTTCCCTTACGGTACTTGCCGACTATCGGTCTCGT 23209410 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 23209411 GCCGGTATTTAGCCTTA 23209427 >seq116 Length=6990774 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||| | | |||||||||||| ||||| ||||||||| || | | || Sbjct 541717 CAACACAAGATGAAAAATAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 541658 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 541657 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 541598 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| || || | | ||||| | |||| | | | || || || Sbjct 541597 CTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAAGGTTCAGCCTTGAGGGTGATGGT 541538 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | ||||||||| || |||||||| || Sbjct 541537 CTTCCCCATAAGGGTTTTCACAAAAATCTGCATTTT 541502 >seq39 Length=18744880 Score = 84.2 bits (92), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG----GGGGTAATCTCGTT 25957 ||||||||||||||| | ||||||| || |||||||| ||| | || |||||| || Sbjct 13189497 AAGCCCGTTCCCTTGAATATGGTTTCACTGGATAGTAGGTAGGACAGTGGGAATCTCCTT 13189556 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||| |||||| || |||||||||| ||||| Sbjct 13189557 CATCCATTCATGTGCATCACTAATTACATGAC 13189588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936235294066