Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq37 349 4e-91 seq5 259 6e-64 seq111 154 2e-32 seq9 114 2e-20 seq22 95.1 2e-14 seq1056 87.8 2e-12 >seq37 Length=19344684 Score = 349 bits (386), Expect = 4e-91 Identities = 579/829 (70%), Gaps = 13/829 (2%) Strand=Plus/Plus Query 32290 GACAAATATCGGCATTTAT---GTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTGT 32346 || ||||| |||| ||| ||| |||| |||||| || | | | |||| ||| | Sbjct 211230 GAAAAATAAAGGCACATATTCAGTTGATTTAGAAGTCAGCACCCAAGGTAAAAGAATTCT 211289 Query 32347 CTTCTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAAT 32403 || | || ||||| |||||||| | || || | ||| || | || || || || | Sbjct 211290 CTGTTGGACTTGACATCACTCCCATCCTCTGATACTTACCTACTCTCTTCTCAAAGAAGT 211349 Query 32404 TAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAA 32463 |||| || ||||| | ||| ||||| ||||| || || |||||||| || | ||| Sbjct 211350 TAGTGTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAA 211409 Query 32464 tttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCA 32523 | |||| |||| ||| || | ||| ||||| ||||| || || ||| |||| Sbjct 211410 CCCTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCA 211469 Query 32524 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTT 32583 | | |||||||| || || || || || || | ||| ||||||| || || |||| Sbjct 211470 TTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTT 211529 Query 32584 CAATAGAGACCGCGTCTGTTA-TAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT 32642 | || || || ||| || | || ||||||| | || || ||| | | | Sbjct 211530 CCATCCGAACAGCA-CTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACT 211588 Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 ||||| ||||||| || |||||||| ||||||| |||||| ||||| | | | | | Sbjct 211589 TGGTGTTTGAACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGT 211648 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 || || ||||| ||||| || ||||| || || || || || ||||| |||||||| ||| Sbjct 211649 TCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCA 211708 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAA-GTCTCTCTCCATA 32821 || || ||||||||||| || ||||| ||||| |||||||| || || | || ||||| Sbjct 211709 AAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAACGTGT-TCACCATA 211767 Query 32822 ---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | | | |||| | ||| |||||||| |||||||| || |||||||| Sbjct 211768 GGTAGCCTCTTTGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGG 211827 Query 32879 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938 ||| || || |||||||| |||||| | | |||| || |||||| | || || || Sbjct 211828 CATCGTTTCAATAGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTC 211887 Query 32939 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 ||| | |||||||| ||||| ||||| ||||||| ||||||||||| || || ||||| Sbjct 211888 AATAAGGAGACTATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAA 211947 Query 32999 GCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33058 || || || || ||||| |||||| | |||||| || | || |||||||| || Sbjct 211948 ACAGTGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTAC 212007 Query 33059 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAt 33107 ||| || | ||| |||||||| || |||| || || |||||| ||| Sbjct 212008 TATGCCATAACTTGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTAT 212056 >seq5 Length=50794693 Score = 259 bits (286), Expect = 6e-64 Identities = 689/1041 (66%), Gaps = 24/1041 (2%) Strand=Plus/Minus Query 63073 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63132 || |||||| |||||||| ||||||||||||| | ||| ||||||||| ||||| Sbjct 46265805 TCATTTCATGAAGAGATCTAGAATCCAAAGAGCAAAAAA--GATCTCTGGCATGCTGTTC 46265748 Query 63133 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63192 | |||||| ||||||| || | ||| | || | | || || |||| || || || Sbjct 46265747 TTTCTTTCCTATATTCTTCTTTAAATCAAACAATTCAAAGATGTCTAAATGTCAAGGCTC 46265688 Query 63193 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63252 || ||| || || | ||||||| | ||||| || || |||| | |||| ||| || Sbjct 46265687 CAGGTAAATAGCAAATGCTCCAGGACCCTTGTTCCCACCTCGATCCAGATATCAAGCTGT 46265628 Query 63253 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGAT 63312 ||| ||||| ||||||| ||| | || |||||||| | || || | ||| || Sbjct 46265627 GTTGTTATATACTCTCAGCATCAGTGCAAGGCCATTGGAATTGCCCTTAGACCCATCAAT 46265568 Query 63313 ATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63372 ||||| ||| | || | |||| ||| | | | ||| ||||| || || |||||| Sbjct 46265567 GTAGCTGCCAGTAGCCCAAATACAACTCAAAGCAACACCAATTCCTCCAGCAGATTTAGA 46265508 Query 63373 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 63432 || || || ||| | |||| || ||||| ||||| || || || || || ||||| | Sbjct 46265507 AATCAACGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCGTCTTTCATGCT 46265448 Query 63433 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492 || |||||||||||||| | ||| | | | || || ||| | || || || || || Sbjct 46265447 CAGAAGAAAACAGCTAGAAAGTTGTGGGTGGTTGGTACCAGCACTGAAGAAAGTTGGTGA 46265388 Query 63493 AGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT---ACGTCTCAATAGCTGAGTCTAT 63549 ||| ||||||||||| | |||| ||| ||| ||| || ||||| ||| || || Sbjct 46265387 AGCATGAGTAAACCACCTCTCAGGAAGAAGACTGTCTGCTGTTTCAATTGCTACATCAAT 46265328 Query 63550 ATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63608 ||| | ||| || || || || | || | ||| ||||| | ||| ||| ||||| | | Sbjct 46265327 ATCTTCTTTGTTG-ATCCCAACAGATACTCTCATCAACATATACTGTGGTATTTCAGCCA 46265269 Query 63609 TCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63668 || || || |||||||| || || | | | ||||||||||| || |||| Sbjct 46265268 CTTTTCCATTGATCTTCAACAAATAAGACAACTGTAGCATCTTAAAACCAAAGTAATTGT 46265209 Query 63669 ATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTA 63728 | || || ||| | | |||||| | || || | | ||| |||| ||| | Sbjct 46265208 AAGAGAAATCTTAGCCACAGATAATAGCAGAATTCAAGTGATCTTTATTGGCCAAAACAA 46265149 Query 63729 CATCCA-TGGTAATACTT-GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATA 63786 ||||| || | |||| | | || ||| | |||| ||| | ||| | || | Sbjct 46265148 TATCCAGTGCT--GACTTGGCCACCATGGGAGAGCGTTTGTCATGATGTGGACTTACGCA 46265091 Query 63787 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGA 63846 ||| | | || |||||||| ||||| || | || |||||||||||||| | || || Sbjct 46265090 GTTATAGAGGTCTTCCATCACATCACTGAACACTTCATTTGTTTCTTTGTGCAAGTTAGA 46265031 Query 63847 TACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGC 63906 || || | ||||| || || || ||||| | || || | ||||| ||| |||||| Sbjct 46265030 GACAGCAGTCCTAGCTGCCAGGATAGCATAGACAGGGTGCTTAGTAGT-CAA--GGCTGC 46264974 Query 63907 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGAT 63966 | | | | | || | ||| | | | || || ||| | || | | |||||| Sbjct 46264973 --------CGCCAAAAATATCTAGTTCCATCATAGTGACCCCACTGTACAAGCATTGGAT 46264922 Query 63967 AACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTT 64026 || ||||| | || | | ||||| | | ||| | | ||||||||| || | Sbjct 46264921 TACTTTCATGGTGATCTGAGCGGGATCAACAAAATCCACAATGAGGCCATAACA-AAGCT 46264863 Query 64027 TCT-AATACGAGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAA 64085 ||| || |||||| | ||||| ||||| ||||| | | || |||| | | || | Sbjct 46264862 TCTGGATTCGAGATTTAATTTTGTCAAATATGACTCGCTTTTGGTGGCCATCTTGCTTGA 46264803 Query 64086 TGACAAACATTTTTGTTGGTG 64106 | ||| |||| || | ||||| Sbjct 46264802 TCACACACATCTTAGCTGGTG 46264782 >seq111 Length=7367144 Score = 154 bits (170), Expect = 2e-32 Identities = 302/439 (69%), Gaps = 12/439 (3%) Strand=Plus/Plus Query 32678 TAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACG 32737 || |||||| || || ||||| | ||| |||||||| ||||| || | ||| || | | Sbjct 4918143 TAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGACATCAGTCATTG 4918202 Query 32738 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 32797 || || ||||| ||||| || ||||| || |||||| |||| | |||||||||| || Sbjct 4918203 TTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAGAGAAGGTGCCTTCTACTGTGGC 4918262 Query 32798 AAAGGC---AATAAGT-CTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 32853 |||||| || | || |||| | || | | ||| ||||| |||| Sbjct 4918263 AAAGGCTGCAACACGTTCTCTGTGGGTAGCAT-CTTTGTTCACAATCCAACACAAGGCCC 4918321 Query 32854 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 32913 |||| |||| ||| || ||||||||||| | || || || || |||||| | | ||| Sbjct 4918322 AATCTGCCTCCTTCTTGACACAAGGCATCCTTTCGATGGCGTTGAAGAGAAATTCCCTTT 4918381 Query 32914 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 32973 | || | |||||||| |||| ||| | || ||| ||| ||| || |||| ||||||| Sbjct 4918382 CTTTGTTGTCTTTAAC--ATGTGTCAGTAAAGAGATTATCCATGTCAGAATATATGTTTT 4918439 Query 32974 CAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC-TGTACAA 33032 | || || ||||| || || |||||||| | || ||| || ||||| || || | Sbjct 4918440 CCATAGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCTTGAACTTCTTGGAC-A 4918495 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 || | || | || |||| || ||||| || | |||||||| || | || | | Sbjct 4918496 CATTGCTCCACCAAGTTTTTATCAACTATGCCACGGCATGCTGCAAAGAAAGTCAGAATA 4918555 Query 33093 TGTTTTATAAAATAttttt 33111 || |||||||||| ||| Sbjct 4918556 TGGGATATAAAATATCTTT 4918574 >seq9 Length=44311105 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 1875011 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 1875070 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || |||||||| ||||| || || || || |||||||| || | || || | Sbjct 1875071 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTTT 1875130 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 1875131 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 1875181 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| | Sbjct 1896017 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAAAAAAGATCTCTGGCACG 1896076 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 1896077 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 1896136 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 1896137 AGGCTCCAGGTAAATAGC 1896154 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | | Sbjct 1878112 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATA 1878171 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 1878172 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 1878231 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 1878232 CTGTTTCTTATACCATA 1878248 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || ||||| || || || || || | Sbjct 1910898 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTGGCTGCCAGGA 1910957 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || ||||| | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1910958 TAGCATAGTCAGGATGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 1911017 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| ||||| || || ||| | || | |||||||| |||||||| Sbjct 1911018 GTTCCACCGTGGTGACCCCACTGTACAAGCCTTGGATTACCTTCAT 1911063 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || |||||||| | || || || || ||||| || || || | || |||| Sbjct 1883222 CATAGGTTTCATATGGTCCATGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCTCCGT 1883281 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||| ||||| ||||||| |||||| | || ||||| || ||||| || | Sbjct 1883282 AATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCTTCTGCACTCTCAAAAGGGT 1883341 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | || ||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 1883342 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGAC 1883401 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 1883402 GTTTATTTGA 1883411 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| | ||| | || | || || ||||| || | || || ||||| ||||||||| Sbjct 1904731 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTGGGCGAAGCATGAGTAAAC 1904790 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || | |||||||| ||||| || || ||||| |||| || || || || || || Sbjct 1904791 CACCTCTCAGAAAGAAGATTATATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATC 1904850 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| ||||| ||||||||| Sbjct 1904851 CCAACAGACACTCTCATCAACATATGCTGTGGTCTTTCA 1904889 >seq22 Length=27210278 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 23199818 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 23199877 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | || || |||||||| |||||| | |||||| || Sbjct 23199878 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 23199937 >seq1056 Length=1934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 30452 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 30511 ||| ||||||| | |||||| ||| | || |||| | | || ||||| || |||| ||| Sbjct 733 TTGAACTTCTTCTATTTCTGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATC 792 Query 30512 CCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 30571 || | || || | || | ||| ||| |||| || | || || | |||||| Sbjct 793 CCTTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTATACAGCACAACACCAACATTTCC 852 Query 30572 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 30628 ||||||||||| ||||| ||||| |||||| |||||| | |||| | || || Sbjct 853 TCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCC 912 Query 30629 AGACCTAGGAGCTATTCTACCATAGCA 30655 ||||| ||||||| ||| |||| || Sbjct 913 AGACCGTGGAGCTACTCTTTCATAACA 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633610725805600